miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19060 5' -56.2 NC_004684.1 + 29715 0.66 0.763425
Target:  5'- gCCCAGguaauccaccUGGCgcaccgGGUCGAUGCCugaccgGGCGGCc -3'
miRNA:   3'- -GGGUC----------ACUG------UCAGCUGCGG------UCGCUGu -5'
19060 5' -56.2 NC_004684.1 + 22885 0.66 0.763425
Target:  5'- uUCGGgagcugcuGCGcGUCGGUGCCAGCGACAa -3'
miRNA:   3'- gGGUCac------UGU-CAGCUGCGGUCGCUGU- -5'
19060 5' -56.2 NC_004684.1 + 61465 0.66 0.760441
Target:  5'- gCCCGGUGGCcagcgcggccagccGGUCGuGCGCgauCAGCGcCGc -3'
miRNA:   3'- -GGGUCACUG--------------UCAGC-UGCG---GUCGCuGU- -5'
19060 5' -56.2 NC_004684.1 + 14951 0.66 0.753436
Target:  5'- uCCCGGUGGCGGcCGACaUCAGaccccCGGCc -3'
miRNA:   3'- -GGGUCACUGUCaGCUGcGGUC-----GCUGu -5'
19060 5' -56.2 NC_004684.1 + 44745 0.66 0.753436
Target:  5'- cUCCAGgucuuuGgGGUCGcCGCUGGCGGCGg -3'
miRNA:   3'- -GGGUCac----UgUCAGCuGCGGUCGCUGU- -5'
19060 5' -56.2 NC_004684.1 + 62880 0.66 0.753436
Target:  5'- cCCCGGguccACGGUgGcCGCCAGCucGGCGg -3'
miRNA:   3'- -GGGUCac--UGUCAgCuGCGGUCG--CUGU- -5'
19060 5' -56.2 NC_004684.1 + 40980 0.66 0.753436
Target:  5'- cCCCGcUGcCAG-CG-CGCCGGUGGCGg -3'
miRNA:   3'- -GGGUcACuGUCaGCuGCGGUCGCUGU- -5'
19060 5' -56.2 NC_004684.1 + 56199 0.66 0.753436
Target:  5'- gCCCGGUGGauga-GACGCUgugggAGCGGCGc -3'
miRNA:   3'- -GGGUCACUgucagCUGCGG-----UCGCUGU- -5'
19060 5' -56.2 NC_004684.1 + 29206 0.66 0.753436
Target:  5'- uCUCGGUGugGGaCGGCaacgGCCAG-GACAu -3'
miRNA:   3'- -GGGUCACugUCaGCUG----CGGUCgCUGU- -5'
19060 5' -56.2 NC_004684.1 + 62976 0.66 0.753436
Target:  5'- gCUCGGUGguGCGcaCGugGCCGGUGGCc -3'
miRNA:   3'- -GGGUCAC--UGUcaGCugCGGUCGCUGu -5'
19060 5' -56.2 NC_004684.1 + 40525 0.66 0.743329
Target:  5'- gCCCAGguu--GUCGGCGgUGGCGACc -3'
miRNA:   3'- -GGGUCacuguCAGCUGCgGUCGCUGu -5'
19060 5' -56.2 NC_004684.1 + 64927 0.66 0.743329
Target:  5'- aCCCAgGUGGCGG-CGgugaGCGCCuGGCGGg- -3'
miRNA:   3'- -GGGU-CACUGUCaGC----UGCGG-UCGCUgu -5'
19060 5' -56.2 NC_004684.1 + 44437 0.66 0.743329
Target:  5'- gCCCGGUGGCguAGUCGACcaGCUugAGC-ACGc -3'
miRNA:   3'- -GGGUCACUG--UCAGCUG--CGG--UCGcUGU- -5'
19060 5' -56.2 NC_004684.1 + 20274 0.66 0.743329
Target:  5'- uCCCGGccccUG-UGGUCGACaCCAGCGAgAa -3'
miRNA:   3'- -GGGUC----ACuGUCAGCUGcGGUCGCUgU- -5'
19060 5' -56.2 NC_004684.1 + 44541 0.66 0.743329
Target:  5'- gCCCGGacGAaccCGGUCGGCagGCCGGUGAUc -3'
miRNA:   3'- -GGGUCa-CU---GUCAGCUG--CGGUCGCUGu -5'
19060 5' -56.2 NC_004684.1 + 51680 0.66 0.733116
Target:  5'- gUCGGUGucucCGGgagcaCGAUGCCGGUGGCGu -3'
miRNA:   3'- gGGUCACu---GUCa----GCUGCGGUCGCUGU- -5'
19060 5' -56.2 NC_004684.1 + 11831 0.66 0.733116
Target:  5'- cCCCGGccacCGGgccaCGGCgGCCAGCGGCGc -3'
miRNA:   3'- -GGGUCacu-GUCa---GCUG-CGGUCGCUGU- -5'
19060 5' -56.2 NC_004684.1 + 53182 0.66 0.733116
Target:  5'- gCCGaUGGCAccGUUGACGCaCAGCGGgAg -3'
miRNA:   3'- gGGUcACUGU--CAGCUGCG-GUCGCUgU- -5'
19060 5' -56.2 NC_004684.1 + 129 0.66 0.733116
Target:  5'- aCCC-GUGuuCAG-CGACGCCAGCc--- -3'
miRNA:   3'- -GGGuCACu-GUCaGCUGCGGUCGcugu -5'
19060 5' -56.2 NC_004684.1 + 39108 0.66 0.733116
Target:  5'- aCCCGGUGACcgGGU--ACGCCuGCG-CGg -3'
miRNA:   3'- -GGGUCACUG--UCAgcUGCGGuCGCuGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.