miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19063 3' -57.9 NC_004684.1 + 526 0.65 0.638028
Target:  5'- -cCGGCGcugacgugcuggccAGCGCGGuCGaGGCCGCCa- -3'
miRNA:   3'- uaGUUGC--------------UCGCGCC-GUaCUGGCGGcu -5'
19063 3' -57.9 NC_004684.1 + 29539 0.66 0.634806
Target:  5'- -cCAAUGGuGCGCGGcCAucacgcucagcgagaUGACCGCUGu -3'
miRNA:   3'- uaGUUGCU-CGCGCC-GU---------------ACUGGCGGCu -5'
19063 3' -57.9 NC_004684.1 + 58652 0.66 0.634806
Target:  5'- cUCGcCGGGCGCGGCGgcGaacaucgggaucagcGCCGCCa- -3'
miRNA:   3'- uAGUuGCUCGCGCCGUa-C---------------UGGCGGcu -5'
19063 3' -57.9 NC_004684.1 + 31476 0.66 0.630511
Target:  5'- cUCGgcGCGAGCcucuuuGCGGUccaccuggccGcGACCGCCGAa -3'
miRNA:   3'- uAGU--UGCUCG------CGCCG----------UaCUGGCGGCU- -5'
19063 3' -57.9 NC_004684.1 + 44827 0.66 0.630511
Target:  5'- gGUgGGCGAGCaGCGGguUGGCgGUCc- -3'
miRNA:   3'- -UAgUUGCUCG-CGCCguACUGgCGGcu -5'
19063 3' -57.9 NC_004684.1 + 18357 0.66 0.630511
Target:  5'- -cCGGCG-GCGCGGU---GCCGCuCGAc -3'
miRNA:   3'- uaGUUGCuCGCGCCGuacUGGCG-GCU- -5'
19063 3' -57.9 NC_004684.1 + 21306 0.66 0.630511
Target:  5'- -gCAACGcaGGCGaggcgguggucCGGCGcGACCGCCGc -3'
miRNA:   3'- uaGUUGC--UCGC-----------GCCGUaCUGGCGGCu -5'
19063 3' -57.9 NC_004684.1 + 61325 0.66 0.629437
Target:  5'- cAUCGGCuaccAGCGCGGCGUGguuggucagcuggGCCG-CGAg -3'
miRNA:   3'- -UAGUUGc---UCGCGCCGUAC-------------UGGCgGCU- -5'
19063 3' -57.9 NC_004684.1 + 27123 0.66 0.619773
Target:  5'- gGUCAACGGG-GUGGCcuucuacaagGUcGACCGCCc- -3'
miRNA:   3'- -UAGUUGCUCgCGCCG----------UA-CUGGCGGcu -5'
19063 3' -57.9 NC_004684.1 + 8583 0.66 0.619773
Target:  5'- -aCAucCGAG-GCGGCAccuACCGCCGGg -3'
miRNA:   3'- uaGUu-GCUCgCGCCGUac-UGGCGGCU- -5'
19063 3' -57.9 NC_004684.1 + 11651 0.66 0.619773
Target:  5'- cAUCGgccACGccAGCacgGCGGCcaacGUGACCGCCGc -3'
miRNA:   3'- -UAGU---UGC--UCG---CGCCG----UACUGGCGGCu -5'
19063 3' -57.9 NC_004684.1 + 42699 0.66 0.619773
Target:  5'- uUCAACGAucugGUcacCGGCGUGACCuCCGGu -3'
miRNA:   3'- uAGUUGCU----CGc--GCCGUACUGGcGGCU- -5'
19063 3' -57.9 NC_004684.1 + 271 0.66 0.616554
Target:  5'- -aCGGCGAG-GCcuucgugcacaccuGGCAcaagaguucgcUGGCCGCCGAg -3'
miRNA:   3'- uaGUUGCUCgCG--------------CCGU-----------ACUGGCGGCU- -5'
19063 3' -57.9 NC_004684.1 + 9879 0.66 0.609046
Target:  5'- -cCGACGccGCGCaggaGCA-GGCCGCCGAc -3'
miRNA:   3'- uaGUUGCu-CGCGc---CGUaCUGGCGGCU- -5'
19063 3' -57.9 NC_004684.1 + 6935 0.66 0.609046
Target:  5'- gGUCAACGuGUcCGGCGUGAagaaguUCGCCa- -3'
miRNA:   3'- -UAGUUGCuCGcGCCGUACU------GGCGGcu -5'
19063 3' -57.9 NC_004684.1 + 63581 0.66 0.598339
Target:  5'- cAUCGgccuGCGcGGCGCGGCGgUGguuACCGCCu- -3'
miRNA:   3'- -UAGU----UGC-UCGCGCCGU-AC---UGGCGGcu -5'
19063 3' -57.9 NC_004684.1 + 15143 0.66 0.598339
Target:  5'- gAUCcACGccAGCGC-GCAgcUGGCCGCCGc -3'
miRNA:   3'- -UAGuUGC--UCGCGcCGU--ACUGGCGGCu -5'
19063 3' -57.9 NC_004684.1 + 35418 0.66 0.598339
Target:  5'- -cCGAgGAGCGCGGgAggcgaUGGucCCGCCGGn -3'
miRNA:   3'- uaGUUgCUCGCGCCgU-----ACU--GGCGGCU- -5'
19063 3' -57.9 NC_004684.1 + 24942 0.66 0.598339
Target:  5'- --gAACGAcagaGCGGCGcgaUGACCGCCa- -3'
miRNA:   3'- uagUUGCUcg--CGCCGU---ACUGGCGGcu -5'
19063 3' -57.9 NC_004684.1 + 19576 0.66 0.597269
Target:  5'- -cCGACGAGCa-GGCAcgccaguUGuucGCCGCCGAg -3'
miRNA:   3'- uaGUUGCUCGcgCCGU-------AC---UGGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.