miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19063 5' -57.8 NC_004684.1 + 41189 0.66 0.640419
Target:  5'- gGGUCGGUGCUGaucaaaggcgaccagACGCCagcgguGCGCGAGc -3'
miRNA:   3'- -CCAGUUACGGCg--------------UGCGGcu----CGCGCUU- -5'
19063 5' -57.8 NC_004684.1 + 2732 0.66 0.639345
Target:  5'- ---aGGUGCCGCugcGCGCCGAcauCGCGGu -3'
miRNA:   3'- ccagUUACGGCG---UGCGGCUc--GCGCUu -5'
19063 5' -57.8 NC_004684.1 + 58518 0.66 0.639345
Target:  5'- cGGUCcagcGUGCCGUugGCgGcGGCGuUGGAg -3'
miRNA:   3'- -CCAGu---UACGGCGugCGgC-UCGC-GCUU- -5'
19063 5' -57.8 NC_004684.1 + 4480 0.66 0.639345
Target:  5'- cGUCGuugGCCGCuaccguaacccCGCCGAGCugGCGGc -3'
miRNA:   3'- cCAGUua-CGGCGu----------GCGGCUCG--CGCUu -5'
19063 5' -57.8 NC_004684.1 + 34269 0.66 0.628599
Target:  5'- --gCAAUGCCGagcaccUugGCC-AGCGCGAGc -3'
miRNA:   3'- ccaGUUACGGC------GugCGGcUCGCGCUU- -5'
19063 5' -57.8 NC_004684.1 + 62601 0.66 0.628599
Target:  5'- cGGUCg--GCCacCGCGCCGAGgCGCu-- -3'
miRNA:   3'- -CCAGuuaCGGc-GUGCGGCUC-GCGcuu -5'
19063 5' -57.8 NC_004684.1 + 40007 0.66 0.628599
Target:  5'- gGGUUGA-GCaCGCGCuCCG-GCGCGAu -3'
miRNA:   3'- -CCAGUUaCG-GCGUGcGGCuCGCGCUu -5'
19063 5' -57.8 NC_004684.1 + 35097 0.66 0.617855
Target:  5'- cGUCAG-GCacaGCGCCGAGCGCc-- -3'
miRNA:   3'- cCAGUUaCGgcgUGCGGCUCGCGcuu -5'
19063 5' -57.8 NC_004684.1 + 7625 0.66 0.617855
Target:  5'- cGGUCGAgaGCCaGCuCGCCGuggcgGGCGUGGu -3'
miRNA:   3'- -CCAGUUa-CGG-CGuGCGGC-----UCGCGCUu -5'
19063 5' -57.8 NC_004684.1 + 20682 0.66 0.617855
Target:  5'- uGUCGGUGgCGCGCucGCacaGGGCGCGc- -3'
miRNA:   3'- cCAGUUACgGCGUG--CGg--CUCGCGCuu -5'
19063 5' -57.8 NC_004684.1 + 38876 0.66 0.617855
Target:  5'- cGGuUCAAcGCCGcCACGCUGgacAGCGaCGAc -3'
miRNA:   3'- -CC-AGUUaCGGC-GUGCGGC---UCGC-GCUu -5'
19063 5' -57.8 NC_004684.1 + 65128 0.66 0.617855
Target:  5'- cGG-CAAUGcCCGC-CGCCGcgcugaucAGCGUGGc -3'
miRNA:   3'- -CCaGUUAC-GGCGuGCGGC--------UCGCGCUu -5'
19063 5' -57.8 NC_004684.1 + 27760 0.66 0.614634
Target:  5'- aGGUgAccGUGCCGCGCGaCCcccgccaggaguggGAGCGCu-- -3'
miRNA:   3'- -CCAgU--UACGGCGUGC-GG--------------CUCGCGcuu -5'
19063 5' -57.8 NC_004684.1 + 8995 0.66 0.607123
Target:  5'- ---aGGUGCUGCGCacgguGCUGAuGCGCGAAg -3'
miRNA:   3'- ccagUUACGGCGUG-----CGGCU-CGCGCUU- -5'
19063 5' -57.8 NC_004684.1 + 57240 0.66 0.607123
Target:  5'- uGGcCAGcgGCgGCugGCUGAGCaCGAGg -3'
miRNA:   3'- -CCaGUUa-CGgCGugCGGCUCGcGCUU- -5'
19063 5' -57.8 NC_004684.1 + 21751 0.66 0.607123
Target:  5'- uGGUCg--GCCGCGCGCU--GCGCc-- -3'
miRNA:   3'- -CCAGuuaCGGCGUGCGGcuCGCGcuu -5'
19063 5' -57.8 NC_004684.1 + 44489 0.66 0.607123
Target:  5'- cGGUCAccuUGUCGCugGCacCGAcGCGCa-- -3'
miRNA:   3'- -CCAGUu--ACGGCGugCG--GCU-CGCGcuu -5'
19063 5' -57.8 NC_004684.1 + 29164 0.66 0.607123
Target:  5'- uGGcCGAcaggcuUGCU-CAUGUCGAGCGCGAAc -3'
miRNA:   3'- -CCaGUU------ACGGcGUGCGGCUCGCGCUU- -5'
19063 5' -57.8 NC_004684.1 + 2852 0.66 0.607123
Target:  5'- cGGUCAccaagGCCGCcgagcCGCUGGGCGUc-- -3'
miRNA:   3'- -CCAGUua---CGGCGu----GCGGCUCGCGcuu -5'
19063 5' -57.8 NC_004684.1 + 25378 0.66 0.607123
Target:  5'- cGGUCAGcGCC-UACGCCGccGCGCa-- -3'
miRNA:   3'- -CCAGUUaCGGcGUGCGGCu-CGCGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.