miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19064 3' -54.7 NC_004684.1 + 5176 0.66 0.842255
Target:  5'- uGUCGAGgugGCGcUGGUuggccaGGAcggcaacguguuCGCCAUCa -3'
miRNA:   3'- gCAGCUCa--UGC-ACCA------CCU------------GCGGUAGc -5'
19064 3' -54.7 NC_004684.1 + 37948 0.66 0.842255
Target:  5'- -cUCGA---CGcGGUGGAgGCCAUCGu -3'
miRNA:   3'- gcAGCUcauGCaCCACCUgCGGUAGC- -5'
19064 3' -54.7 NC_004684.1 + 53648 0.66 0.833652
Target:  5'- cCGUUGAGcaccgAgGUGGUGGcaccgaccgacaGCGCCuggGUCGg -3'
miRNA:   3'- -GCAGCUCa----UgCACCACC------------UGCGG---UAGC- -5'
19064 3' -54.7 NC_004684.1 + 16798 0.66 0.833652
Target:  5'- gCGUCG----UGUGGUGGgcGCGCCAUUc -3'
miRNA:   3'- -GCAGCucauGCACCACC--UGCGGUAGc -5'
19064 3' -54.7 NC_004684.1 + 12662 0.66 0.833652
Target:  5'- gCG-CGAGcUGCGcucgcUGGUGGAgGCCGaCGa -3'
miRNA:   3'- -GCaGCUC-AUGC-----ACCACCUgCGGUaGC- -5'
19064 3' -54.7 NC_004684.1 + 20035 0.66 0.824849
Target:  5'- cCGcCGGGUccuacCGUGGccUGGugGCCAugcUCGa -3'
miRNA:   3'- -GCaGCUCAu----GCACC--ACCugCGGU---AGC- -5'
19064 3' -54.7 NC_004684.1 + 55287 0.66 0.824849
Target:  5'- gGUCGGGgguUGCGUGaUGGcCGCCGcgCGg -3'
miRNA:   3'- gCAGCUC---AUGCACcACCuGCGGUa-GC- -5'
19064 3' -54.7 NC_004684.1 + 54859 0.66 0.824849
Target:  5'- gCGUCGA---UGUcGGUGGGCaGCuCAUCGg -3'
miRNA:   3'- -GCAGCUcauGCA-CCACCUG-CG-GUAGC- -5'
19064 3' -54.7 NC_004684.1 + 56891 0.66 0.823958
Target:  5'- cCGUCGgcggcccAGUGCGUcGGccgGGucuUGCCGUCGa -3'
miRNA:   3'- -GCAGC-------UCAUGCA-CCa--CCu--GCGGUAGC- -5'
19064 3' -54.7 NC_004684.1 + 36929 0.66 0.815853
Target:  5'- gGUCGAGgcCG-GGUGGAcaCGCCu--- -3'
miRNA:   3'- gCAGCUCauGCaCCACCU--GCGGuagc -5'
19064 3' -54.7 NC_004684.1 + 46347 0.67 0.787801
Target:  5'- aCGaUGGGaGCGUGGUGGuCGUCGugcUCGg -3'
miRNA:   3'- -GCaGCUCaUGCACCACCuGCGGU---AGC- -5'
19064 3' -54.7 NC_004684.1 + 11035 0.67 0.768314
Target:  5'- aCGUCaucgGCGUGGUggaGGACGcCCGUCu -3'
miRNA:   3'- -GCAGcucaUGCACCA---CCUGC-GGUAGc -5'
19064 3' -54.7 NC_004684.1 + 11366 0.67 0.768314
Target:  5'- cCG-CGAgGUGCcgGUGGUGG-CGuCCAUCGu -3'
miRNA:   3'- -GCaGCU-CAUG--CACCACCuGC-GGUAGC- -5'
19064 3' -54.7 NC_004684.1 + 21928 0.67 0.758365
Target:  5'- aCGUcacCGAGUGCGUcugcggccuGGUGauGACGCCAUg- -3'
miRNA:   3'- -GCA---GCUCAUGCA---------CCAC--CUGCGGUAgc -5'
19064 3' -54.7 NC_004684.1 + 66181 0.67 0.758365
Target:  5'- aGcCGguGGUG-GUGGUGGugGCCAUgGu -3'
miRNA:   3'- gCaGC--UCAUgCACCACCugCGGUAgC- -5'
19064 3' -54.7 NC_004684.1 + 62351 0.68 0.72679
Target:  5'- gCGcCGGGUgccagacGCGUGGUGGccaccguUGCCAUCc -3'
miRNA:   3'- -GCaGCUCA-------UGCACCACCu------GCGGUAGc -5'
19064 3' -54.7 NC_004684.1 + 36843 0.68 0.700683
Target:  5'- gGUCGAGgugccggaggACGUGGaagaaggcgacaugcUGGugGCCGUgGu -3'
miRNA:   3'- gCAGCUCa---------UGCACC---------------ACCugCGGUAgC- -5'
19064 3' -54.7 NC_004684.1 + 18847 0.69 0.664573
Target:  5'- gGUCGGGU-CGUGGUcggugaccgGGugGCCGcacUCa -3'
miRNA:   3'- gCAGCUCAuGCACCA---------CCugCGGU---AGc -5'
19064 3' -54.7 NC_004684.1 + 5786 0.69 0.664573
Target:  5'- gCGUgGuGUGCG-GGcgGGACGCC-UCGa -3'
miRNA:   3'- -GCAgCuCAUGCaCCa-CCUGCGGuAGC- -5'
19064 3' -54.7 NC_004684.1 + 2757 0.71 0.568338
Target:  5'- gCGUCGAGUggACGUuccaGGUguccagccuGGACGCCAgCGa -3'
miRNA:   3'- -GCAGCUCA--UGCA----CCA---------CCUGCGGUaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.