miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19064 5' -54.1 NC_004684.1 + 64504 0.65 0.856088
Target:  5'- gUCgGCGAacguguuGCGCACCAGCAggUCGUc--- -3'
miRNA:   3'- -GGgCGCU-------CGCGUGGUUGU--AGCAcaag -5'
19064 5' -54.1 NC_004684.1 + 25992 0.66 0.848567
Target:  5'- aCCCGCuGGCGCuCCuGGCggCGgccggGUUCa -3'
miRNA:   3'- -GGGCGcUCGCGuGG-UUGuaGCa----CAAG- -5'
19064 5' -54.1 NC_004684.1 + 12886 0.66 0.848567
Target:  5'- gCCgGUGAGCGCgguacgagcuuACCGGCGUUGUc--- -3'
miRNA:   3'- -GGgCGCUCGCG-----------UGGUUGUAGCAcaag -5'
19064 5' -54.1 NC_004684.1 + 9268 0.66 0.848567
Target:  5'- uCCC-CGAGCugGCCGAUGUCGaGUUCc -3'
miRNA:   3'- -GGGcGCUCGcgUGGUUGUAGCaCAAG- -5'
19064 5' -54.1 NC_004684.1 + 57002 0.66 0.84772
Target:  5'- aCCGCcggggacGAGCGCGCCAuCGggGUGcgCu -3'
miRNA:   3'- gGGCG-------CUCGCGUGGUuGUagCACaaG- -5'
19064 5' -54.1 NC_004684.1 + 13055 0.66 0.840866
Target:  5'- uUCCGCGAGauCGCGCUgGGCAUCGacucggugcgccccgGUUCg -3'
miRNA:   3'- -GGGCGCUC--GCGUGG-UUGUAGCa--------------CAAG- -5'
19064 5' -54.1 NC_004684.1 + 64433 0.66 0.839999
Target:  5'- aCCCGCaacagcAGCGCGCCGAUGgccUCGgUGcUCg -3'
miRNA:   3'- -GGGCGc-----UCGCGUGGUUGU---AGC-ACaAG- -5'
19064 5' -54.1 NC_004684.1 + 15625 0.66 0.839999
Target:  5'- aCCGCGAGCGCGagcaCGACAagCGccUGg-- -3'
miRNA:   3'- gGGCGCUCGCGUg---GUUGUa-GC--ACaag -5'
19064 5' -54.1 NC_004684.1 + 20556 0.66 0.839999
Target:  5'- gCCGCagcuGAGCGCcgguuGCCGACAgUGUGcgCa -3'
miRNA:   3'- gGGCG----CUCGCG-----UGGUUGUaGCACaaG- -5'
19064 5' -54.1 NC_004684.1 + 34853 0.66 0.839999
Target:  5'- gCCGUGGGCGguUCcgcGCGUUGUGcgCg -3'
miRNA:   3'- gGGCGCUCGCguGGu--UGUAGCACaaG- -5'
19064 5' -54.1 NC_004684.1 + 17514 0.66 0.839999
Target:  5'- -gCGCGAGCGCgguGCCAcgccggACGaCGUGgUCg -3'
miRNA:   3'- ggGCGCUCGCG---UGGU------UGUaGCACaAG- -5'
19064 5' -54.1 NC_004684.1 + 37155 0.66 0.839999
Target:  5'- uUCUGgGAGCGCGCCGagggccACGUCGc---- -3'
miRNA:   3'- -GGGCgCUCGCGUGGU------UGUAGCacaag -5'
19064 5' -54.1 NC_004684.1 + 19830 0.66 0.839999
Target:  5'- gCCgaGCaAGCGCGaCAACAUCGUGg-- -3'
miRNA:   3'- -GGg-CGcUCGCGUgGUUGUAGCACaag -5'
19064 5' -54.1 NC_004684.1 + 49062 0.66 0.831218
Target:  5'- cUCCGgGGGCgGCACCGGCGUgCGg---- -3'
miRNA:   3'- -GGGCgCUCG-CGUGGUUGUA-GCacaag -5'
19064 5' -54.1 NC_004684.1 + 8016 0.66 0.831218
Target:  5'- gCCGcCGGGCGguuccaggaCACCGuGCG-CGUGUUCa -3'
miRNA:   3'- gGGC-GCUCGC---------GUGGU-UGUaGCACAAG- -5'
19064 5' -54.1 NC_004684.1 + 50335 0.66 0.831218
Target:  5'- gCCagGCGGGCggccuccuugGCAUCGGCAUCGgcggcGUUCu -3'
miRNA:   3'- -GGg-CGCUCG----------CGUGGUUGUAGCa----CAAG- -5'
19064 5' -54.1 NC_004684.1 + 15686 0.66 0.831218
Target:  5'- gCCaGCG-GCGgcaccgacgcCACCGGCAUCGUGcUCc -3'
miRNA:   3'- gGG-CGCuCGC----------GUGGUUGUAGCACaAG- -5'
19064 5' -54.1 NC_004684.1 + 36398 0.66 0.822232
Target:  5'- gCUCGCGGGCcuaccuccucgaGCGCCAcgGCuUCGUGg-- -3'
miRNA:   3'- -GGGCGCUCG------------CGUGGU--UGuAGCACaag -5'
19064 5' -54.1 NC_004684.1 + 15780 0.66 0.822232
Target:  5'- aUCGCGgcGGCGaCACCGGCAaCGUGc-- -3'
miRNA:   3'- gGGCGC--UCGC-GUGGUUGUaGCACaag -5'
19064 5' -54.1 NC_004684.1 + 33383 0.66 0.822232
Target:  5'- cCCCGCGuAGCGCGugauCgAGCAgCuUGUUCa -3'
miRNA:   3'- -GGGCGC-UCGCGU----GgUUGUaGcACAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.