miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19065 3' -60.5 NC_004684.1 + 5796 0.66 0.532315
Target:  5'- cGgGCGGGacgCCUcgaccaccgaGGcgucCCAGCUGCGCGa -3'
miRNA:   3'- -CgUGCCCaa-GGA----------CCa---GGUCGGCGCGC- -5'
19065 3' -60.5 NC_004684.1 + 7893 0.66 0.532315
Target:  5'- cGCGCccGGUgcUCCguugGGgccgCUGGCCGCGCa -3'
miRNA:   3'- -CGUGc-CCA--AGGa---CCa---GGUCGGCGCGc -5'
19065 3' -60.5 NC_004684.1 + 23560 0.66 0.532315
Target:  5'- cGUGCGGGgacgaguaCCUGGcgaCCucGCUGCGCGc -3'
miRNA:   3'- -CGUGCCCaa------GGACCa--GGu-CGGCGCGC- -5'
19065 3' -60.5 NC_004684.1 + 7564 0.66 0.522273
Target:  5'- gGCccCGGGUggCgCUGGUgCGGCUgguGCGCGg -3'
miRNA:   3'- -CGu-GCCCAa-G-GACCAgGUCGG---CGCGC- -5'
19065 3' -60.5 NC_004684.1 + 67005 0.66 0.512304
Target:  5'- cGUACGcGGggCCgucGGUCUcggccaGGUCGCGCa -3'
miRNA:   3'- -CGUGC-CCaaGGa--CCAGG------UCGGCGCGc -5'
19065 3' -60.5 NC_004684.1 + 25382 0.66 0.512304
Target:  5'- gGUACGGGaUCCaGGagguugucgCCAGCggccacCGCGCGg -3'
miRNA:   3'- -CGUGCCCaAGGaCCa--------GGUCG------GCGCGC- -5'
19065 3' -60.5 NC_004684.1 + 62267 0.66 0.509329
Target:  5'- uCAUGcGGUggCCUucagcaGGUCCAggcgcugcuccagcGCCGCGCGg -3'
miRNA:   3'- cGUGC-CCAa-GGA------CCAGGU--------------CGGCGCGC- -5'
19065 3' -60.5 NC_004684.1 + 19346 0.66 0.502415
Target:  5'- -aGCGGGaggCgCUGaUCCAGCgGCGCa -3'
miRNA:   3'- cgUGCCCaa-G-GACcAGGUCGgCGCGc -5'
19065 3' -60.5 NC_004684.1 + 1488 0.66 0.482894
Target:  5'- gGUGCGGcGgcCCUGGUggCCAaccugcgcGCCGCGCu -3'
miRNA:   3'- -CGUGCC-CaaGGACCA--GGU--------CGGCGCGc -5'
19065 3' -60.5 NC_004684.1 + 51588 0.66 0.481928
Target:  5'- gGCGacCGGGUggUCCaaGGUCUccagguguuccuuGGCCGCGCu -3'
miRNA:   3'- -CGU--GCCCA--AGGa-CCAGG-------------UCGGCGCGc -5'
19065 3' -60.5 NC_004684.1 + 63474 0.67 0.473272
Target:  5'- gGCAuuCGGGggcgCgaGGccUCCAGCUGCGCc -3'
miRNA:   3'- -CGU--GCCCaa--GgaCC--AGGUCGGCGCGc -5'
19065 3' -60.5 NC_004684.1 + 21055 0.67 0.473272
Target:  5'- uGCACGGGUgccggUgcugaccgggcaCCUGGgCCGGUCaGUGCGg -3'
miRNA:   3'- -CGUGCCCA-----A------------GGACCaGGUCGG-CGCGC- -5'
19065 3' -60.5 NC_004684.1 + 58851 0.67 0.473272
Target:  5'- cGCACaGGUccaCCUcGUCCGGCC-CGCa -3'
miRNA:   3'- -CGUGcCCAa--GGAcCAGGUCGGcGCGc -5'
19065 3' -60.5 NC_004684.1 + 12214 0.67 0.473272
Target:  5'- aGCAucacCGGGUUCC-GGUaCguGCCGCcCGa -3'
miRNA:   3'- -CGU----GCCCAAGGaCCA-GguCGGCGcGC- -5'
19065 3' -60.5 NC_004684.1 + 45081 0.67 0.473272
Target:  5'- cCACGGGgagcaUCggGGUUCGgcaccgccGCCGCGCGg -3'
miRNA:   3'- cGUGCCCa----AGgaCCAGGU--------CGGCGCGC- -5'
19065 3' -60.5 NC_004684.1 + 51781 0.67 0.46945
Target:  5'- cGCuCGcGGUacucguccagguagUCCcGGUCCacggccaGGCCGCGCGc -3'
miRNA:   3'- -CGuGC-CCA--------------AGGaCCAGG-------UCGGCGCGC- -5'
19065 3' -60.5 NC_004684.1 + 57898 0.67 0.454323
Target:  5'- cGUACGGGagugaCCgGGUaCGGCUGCGCu -3'
miRNA:   3'- -CGUGCCCaa---GGaCCAgGUCGGCGCGc -5'
19065 3' -60.5 NC_004684.1 + 54214 0.67 0.454323
Target:  5'- aGguCGuGGcugUCCUGGaCCAGgUGCGCGu -3'
miRNA:   3'- -CguGC-CCa--AGGACCaGGUCgGCGCGC- -5'
19065 3' -60.5 NC_004684.1 + 23552 0.67 0.445004
Target:  5'- gGCAUcGGUcgcggCCUGGacagCCugccgGGCCGCGCGa -3'
miRNA:   3'- -CGUGcCCAa----GGACCa---GG-----UCGGCGCGC- -5'
19065 3' -60.5 NC_004684.1 + 6773 0.67 0.435793
Target:  5'- cGCAUGGGcgacgugcgCCgGGUgaCCGGCCuGCGCa -3'
miRNA:   3'- -CGUGCCCaa-------GGaCCA--GGUCGG-CGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.