miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19065 5' -51.7 NC_004684.1 + 20430 0.66 0.907493
Target:  5'- gGCGCAUCA---GCCUGGc---GCUGu -3'
miRNA:   3'- aCGCGUAGUucuUGGACCuguuCGAC- -5'
19065 5' -51.7 NC_004684.1 + 25250 0.66 0.907493
Target:  5'- cGCGCugGUgAAG-GCgCUGGAgAAGCUGc -3'
miRNA:   3'- aCGCG--UAgUUCuUG-GACCUgUUCGAC- -5'
19065 5' -51.7 NC_004684.1 + 56186 0.66 0.907493
Target:  5'- gGCGCuAUCGAGcGCCcggUGGAUGAgacGCUGu -3'
miRNA:   3'- aCGCG-UAGUUCuUGG---ACCUGUU---CGAC- -5'
19065 5' -51.7 NC_004684.1 + 17470 0.66 0.907493
Target:  5'- cGCGCccugcUCAucGACCUGGuGCAggAGCUGa -3'
miRNA:   3'- aCGCGu----AGUucUUGGACC-UGU--UCGAC- -5'
19065 5' -51.7 NC_004684.1 + 4836 0.66 0.907493
Target:  5'- gGC-CGaCAAGGccaAgCUGGACGAGCUGc -3'
miRNA:   3'- aCGcGUaGUUCU---UgGACCUGUUCGAC- -5'
19065 5' -51.7 NC_004684.1 + 35930 0.66 0.906815
Target:  5'- cGCGC--CGAGGACCUgcucuacGGGC-GGCUGu -3'
miRNA:   3'- aCGCGuaGUUCUUGGA-------CCUGuUCGAC- -5'
19065 5' -51.7 NC_004684.1 + 41066 0.66 0.90545
Target:  5'- -cCGCGUCGgcaaucggcggcccGGcGGCCUGGcCGAGCUGc -3'
miRNA:   3'- acGCGUAGU--------------UC-UUGGACCuGUUCGAC- -5'
19065 5' -51.7 NC_004684.1 + 582 0.66 0.900583
Target:  5'- cGUGC----AGAugUUGGugGAGCUGa -3'
miRNA:   3'- aCGCGuaguUCUugGACCugUUCGAC- -5'
19065 5' -51.7 NC_004684.1 + 42264 0.66 0.900583
Target:  5'- cGCGag-CAAGAccgacACCUGGGCAauccAGCa- -3'
miRNA:   3'- aCGCguaGUUCU-----UGGACCUGU----UCGac -5'
19065 5' -51.7 NC_004684.1 + 38405 0.66 0.900583
Target:  5'- gGCGUGgagacCGAGAACCUGGcCGAuGCg- -3'
miRNA:   3'- aCGCGUa----GUUCUUGGACCuGUU-CGac -5'
19065 5' -51.7 NC_004684.1 + 9467 0.66 0.89339
Target:  5'- gGCGCu---GGAGCUggcGGGCAAGCg- -3'
miRNA:   3'- aCGCGuaguUCUUGGa--CCUGUUCGac -5'
19065 5' -51.7 NC_004684.1 + 5802 0.66 0.89339
Target:  5'- gUGCGagGUCGGGAcgugccgcACCgUGGAguaCAAGCUGg -3'
miRNA:   3'- -ACGCg-UAGUUCU--------UGG-ACCU---GUUCGAC- -5'
19065 5' -51.7 NC_004684.1 + 22896 0.66 0.885917
Target:  5'- cUGCGCGUCGGu-GCCaGcGACAAGgUGa -3'
miRNA:   3'- -ACGCGUAGUUcuUGGaC-CUGUUCgAC- -5'
19065 5' -51.7 NC_004684.1 + 45619 0.66 0.885917
Target:  5'- aGCGCGUCGGucuuGCCggGGaACAGGCg- -3'
miRNA:   3'- aCGCGUAGUUcu--UGGa-CC-UGUUCGac -5'
19065 5' -51.7 NC_004684.1 + 50452 0.66 0.885917
Target:  5'- aGCGCAUauccguACCaGGugGGGCUGu -3'
miRNA:   3'- aCGCGUAguucu-UGGaCCugUUCGAC- -5'
19065 5' -51.7 NC_004684.1 + 2958 0.66 0.885917
Target:  5'- cGCGCAcaUCGAGAccaucggugcCCUGGAC-GGCg- -3'
miRNA:   3'- aCGCGU--AGUUCUu---------GGACCUGuUCGac -5'
19065 5' -51.7 NC_004684.1 + 455 0.66 0.878171
Target:  5'- cGCGCAUCGu-GGCCgUGGACAaccgGGCc- -3'
miRNA:   3'- aCGCGUAGUucUUGG-ACCUGU----UCGac -5'
19065 5' -51.7 NC_004684.1 + 21636 0.67 0.870157
Target:  5'- gGCGUgacCAAGAACCUGGucacgguCAugguGCUGa -3'
miRNA:   3'- aCGCGua-GUUCUUGGACCu------GUu---CGAC- -5'
19065 5' -51.7 NC_004684.1 + 61145 0.67 0.870157
Target:  5'- cGCGCAcugcaucaccgUCGAaGGCCUGGcCGcccAGCUGg -3'
miRNA:   3'- aCGCGU-----------AGUUcUUGGACCuGU---UCGAC- -5'
19065 5' -51.7 NC_004684.1 + 8196 0.67 0.870157
Target:  5'- gGCGCAgcugaUCAAGcGCgUGGuCGAGCa- -3'
miRNA:   3'- aCGCGU-----AGUUCuUGgACCuGUUCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.