miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19066 3' -61.8 NC_004684.1 + 10100 0.66 0.448959
Target:  5'- gCUGGCCGgGGugCgGcucGCCGUCacaGGCc -3'
miRNA:   3'- -GACCGGCaCCugGgC---UGGUAGgg-CCG- -5'
19066 3' -61.8 NC_004684.1 + 11382 0.66 0.448959
Target:  5'- gUGGCguccauCGUGGccucguucACgCCGACCAccuaCCCGGCc -3'
miRNA:   3'- gACCG------GCACC--------UG-GGCUGGUa---GGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 62660 0.66 0.448959
Target:  5'- -cGGCUGUGG--CCGugCGcgaggUCCUGGCc -3'
miRNA:   3'- gaCCGGCACCugGGCugGU-----AGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 54655 0.66 0.448959
Target:  5'- -aGGgCGUcGACCuCGGCCugGUCCaCGGCc -3'
miRNA:   3'- gaCCgGCAcCUGG-GCUGG--UAGG-GCCG- -5'
19066 3' -61.8 NC_004684.1 + 38182 0.66 0.446205
Target:  5'- cCUGGCCGUugccgucccacaccGaGACCC-ACUgcGUCCaCGGCu -3'
miRNA:   3'- -GACCGGCA--------------C-CUGGGcUGG--UAGG-GCCG- -5'
19066 3' -61.8 NC_004684.1 + 35600 0.66 0.439814
Target:  5'- --aGuuGUGGACCagcGCCAuguUCCCGGUc -3'
miRNA:   3'- gacCggCACCUGGgc-UGGU---AGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 6946 0.66 0.439814
Target:  5'- gCUGGCCGaGGucgaACCCGGCgaguCGUUCCaGGUg -3'
miRNA:   3'- -GACCGGCaCC----UGGGCUG----GUAGGG-CCG- -5'
19066 3' -61.8 NC_004684.1 + 27120 0.66 0.439814
Target:  5'- gCUGGCCGUugccgGGACgCUGAUCGacgugCUgGGCg -3'
miRNA:   3'- -GACCGGCA-----CCUG-GGCUGGUa----GGgCCG- -5'
19066 3' -61.8 NC_004684.1 + 22794 0.66 0.438905
Target:  5'- gUGGCUG-GcGACUucaacacgcugguCGACCGgcaguUCCCGGCg -3'
miRNA:   3'- gACCGGCaC-CUGG-------------GCUGGU-----AGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 40718 0.66 0.430775
Target:  5'- gUGGCCG-GGA--CGACCAgCgCGGCg -3'
miRNA:   3'- gACCGGCaCCUggGCUGGUaGgGCCG- -5'
19066 3' -61.8 NC_004684.1 + 20480 0.66 0.430775
Target:  5'- uUGGCCGguccugggGGAUgCGGCgGggugCUCGGCu -3'
miRNA:   3'- gACCGGCa-------CCUGgGCUGgUa---GGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 38824 0.66 0.430775
Target:  5'- cCUGGCgGU--GCCCGACgG-CCUGGUg -3'
miRNA:   3'- -GACCGgCAccUGGGCUGgUaGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 9346 0.66 0.430775
Target:  5'- -aGGCCu----CCgGugCGUCCCGGCg -3'
miRNA:   3'- gaCCGGcaccuGGgCugGUAGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 9061 0.66 0.430775
Target:  5'- -gGGCCaccGGGCgCG-CCAUgaCCCGGCg -3'
miRNA:   3'- gaCCGGca-CCUGgGCuGGUA--GGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 62626 0.66 0.430775
Target:  5'- -gGaGCCGUGGcGCuuGAUCAggUCgCGGCa -3'
miRNA:   3'- gaC-CGGCACC-UGggCUGGU--AGgGCCG- -5'
19066 3' -61.8 NC_004684.1 + 1240 0.66 0.430775
Target:  5'- cCUGGUCGgucGCCCGGC---CCCGGCc -3'
miRNA:   3'- -GACCGGCaccUGGGCUGguaGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 10648 0.67 0.421847
Target:  5'- gUGGUC-UGGugCCGGuucCCGUgCUGGCg -3'
miRNA:   3'- gACCGGcACCugGGCU---GGUAgGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 22327 0.67 0.421847
Target:  5'- ---cCCGUGG-CCCG-CCA-CCCGGUa -3'
miRNA:   3'- gaccGGCACCuGGGCuGGUaGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 41347 0.67 0.421847
Target:  5'- -cGGCCG-GGcCaaGGCCA-CCCGGUu -3'
miRNA:   3'- gaCCGGCaCCuGggCUGGUaGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 7743 0.67 0.421847
Target:  5'- aCUGGCgCGcaugggGGACCUGACCGggCCGa- -3'
miRNA:   3'- -GACCG-GCa-----CCUGGGCUGGUagGGCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.