miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19066 5' -54.7 NC_004684.1 + 20432 0.67 0.761296
Target:  5'- cGCAUCagccugGcGCUGuGCACGGCGGCg -3'
miRNA:   3'- -CGUAGcacua-C-CGGCuCGUGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 57912 0.67 0.761296
Target:  5'- ------aGGUGGCCGGGCugaccgcCGAUGACa -3'
miRNA:   3'- cguagcaCUACCGGCUCGu------GCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 41662 0.67 0.75522
Target:  5'- gGCGUaCGaagGccgGGCCGAccucggcaacacccaGCGCGGCGACg -3'
miRNA:   3'- -CGUA-GCa--Cua-CCGGCU---------------CGUGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 65770 0.67 0.751144
Target:  5'- cGCcgCGcgccGGUGGgCGcgcGCACGGCGACc -3'
miRNA:   3'- -CGuaGCa---CUACCgGCu--CGUGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 64572 0.67 0.740875
Target:  5'- cGCAggaUCGUGuaccGGCCcGGUACGuCGACc -3'
miRNA:   3'- -CGU---AGCACua--CCGGcUCGUGCuGCUG- -5'
19066 5' -54.7 NC_004684.1 + 40706 0.67 0.740875
Target:  5'- aGCugggCGgcGGUGGCCGggacgaccAGCGCGGCGGg -3'
miRNA:   3'- -CGua--GCa-CUACCGGC--------UCGUGCUGCUg -5'
19066 5' -54.7 NC_004684.1 + 22211 0.67 0.740874
Target:  5'- gGCGggGUGGUGGCCGAcuucauggacCugGAgGACg -3'
miRNA:   3'- -CGUagCACUACCGGCUc---------GugCUgCUG- -5'
19066 5' -54.7 NC_004684.1 + 27430 0.67 0.730499
Target:  5'- cGCAUgGUGgcGGCauugGAGCGCGGugccaccacCGGCg -3'
miRNA:   3'- -CGUAgCACuaCCGg---CUCGUGCU---------GCUG- -5'
19066 5' -54.7 NC_004684.1 + 44807 0.67 0.730499
Target:  5'- uGCGUCGUaguuguaguccgGGUGGgCGAGCAgCGGguUGGCg -3'
miRNA:   3'- -CGUAGCA------------CUACCgGCUCGU-GCU--GCUG- -5'
19066 5' -54.7 NC_004684.1 + 48985 0.67 0.730499
Target:  5'- cGCGUCGgugcccUGcUGGCCGGGCcCGACc-- -3'
miRNA:   3'- -CGUAGC------ACuACCGGCUCGuGCUGcug -5'
19066 5' -54.7 NC_004684.1 + 17434 0.67 0.730499
Target:  5'- -gGUC-UGAUGaCCGAGCGCGACa-- -3'
miRNA:   3'- cgUAGcACUACcGGCUCGUGCUGcug -5'
19066 5' -54.7 NC_004684.1 + 55298 0.67 0.730498
Target:  5'- ---gCGUGAUGGCCGccgcgcgggccAGCAccucgucgcgcuCGGCGGCc -3'
miRNA:   3'- cguaGCACUACCGGC-----------UCGU------------GCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 22213 0.68 0.720026
Target:  5'- cGCA----GGUGGCCucccuGCGCGACGGCa -3'
miRNA:   3'- -CGUagcaCUACCGGcu---CGUGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 24504 0.68 0.720026
Target:  5'- gGCGgucUCGgugccaGA-GGCCGGGCguGCGGCGGCc -3'
miRNA:   3'- -CGU---AGCa-----CUaCCGGCUCG--UGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 22708 0.68 0.70947
Target:  5'- cGCAggaCGUGGccaaGGCCGuggcuGGCACGcGCGACc -3'
miRNA:   3'- -CGUa--GCACUa---CCGGC-----UCGUGC-UGCUG- -5'
19066 5' -54.7 NC_004684.1 + 61338 0.68 0.698839
Target:  5'- cGCggCGUGGUuggucagcugGGCCGcgaGGCGCuGGCGGCc -3'
miRNA:   3'- -CGuaGCACUA----------CCGGC---UCGUG-CUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 23557 0.68 0.698839
Target:  5'- -uGUCGUGcgGGgaCGAGUACcuGGCGACc -3'
miRNA:   3'- cgUAGCACuaCCg-GCUCGUG--CUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 41990 0.68 0.698839
Target:  5'- cCAUUGguacUGGCCGccgcuguGCGCGGCGGCg -3'
miRNA:   3'- cGUAGCacu-ACCGGCu------CGUGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 26432 0.68 0.698839
Target:  5'- gGguUCGccgccGGUGGcCCGGuGUACGGCGGCa -3'
miRNA:   3'- -CguAGCa----CUACC-GGCU-CGUGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 62987 0.68 0.688146
Target:  5'- cGCA-CGUGGccggUGGCCGGGaaCGCGAUGcGCa -3'
miRNA:   3'- -CGUaGCACU----ACCGGCUC--GUGCUGC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.