miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19067 3' -57.9 NC_004684.1 + 21019 0.66 0.591665
Target:  5'- aCAUCGGCAucGUgaUGGCCgagCaCGACGaCCa -3'
miRNA:   3'- -GUAGCCGUu-CG--ACCGGa--G-GUUGC-GGa -5'
19067 3' -57.9 NC_004684.1 + 6224 0.66 0.580938
Target:  5'- -cUCGGCcAGCUGGgCggCCAG-GCCUu -3'
miRNA:   3'- guAGCCGuUCGACCgGa-GGUUgCGGA- -5'
19067 3' -57.9 NC_004684.1 + 29785 0.66 0.580938
Target:  5'- -uUCGGCAugGGCggccgGGCCcgcacgguaCCGAUGCCg -3'
miRNA:   3'- guAGCCGU--UCGa----CCGGa--------GGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 64828 0.66 0.580938
Target:  5'- aCAcCGGCcucGGCgaaGGCCUCCGcGCGCUc -3'
miRNA:   3'- -GUaGCCGu--UCGa--CCGGAGGU-UGCGGa -5'
19067 3' -57.9 NC_004684.1 + 31002 0.66 0.580938
Target:  5'- --aUGGCGcAGCUGGgC-CUGACGCCg -3'
miRNA:   3'- guaGCCGU-UCGACCgGaGGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 57141 0.66 0.580938
Target:  5'- --gCGGCuGGUUcGCCUCCAugGCg- -3'
miRNA:   3'- guaGCCGuUCGAcCGGAGGUugCGga -5'
19067 3' -57.9 NC_004684.1 + 29133 0.66 0.580938
Target:  5'- --aCGuGCGAGCUGGUggugCCGACGCa- -3'
miRNA:   3'- guaGC-CGUUCGACCGga--GGUUGCGga -5'
19067 3' -57.9 NC_004684.1 + 26298 0.66 0.580938
Target:  5'- cCAUCGGUAcgcAGCUcGGCCaggccgCCGGgcCGCCg -3'
miRNA:   3'- -GUAGCCGU---UCGA-CCGGa-----GGUU--GCGGa -5'
19067 3' -57.9 NC_004684.1 + 44434 0.66 0.570252
Target:  5'- gCGUUGGCGcGCuucUGGCCUUCGGCGgUg -3'
miRNA:   3'- -GUAGCCGUuCG---ACCGGAGGUUGCgGa -5'
19067 3' -57.9 NC_004684.1 + 22089 0.66 0.570252
Target:  5'- --aCGGCAgcgacGGCUGGCUgguguUCCuGugGCCg -3'
miRNA:   3'- guaGCCGU-----UCGACCGG-----AGG-UugCGGa -5'
19067 3' -57.9 NC_004684.1 + 24528 0.66 0.570252
Target:  5'- gCGUgCGGCGgccuGGUUGGCC-CCAccGCGCUc -3'
miRNA:   3'- -GUA-GCCGU----UCGACCGGaGGU--UGCGGa -5'
19067 3' -57.9 NC_004684.1 + 14219 0.66 0.570252
Target:  5'- gGUCGGCcuguccccGgaGGCCUUC-ACGCCg -3'
miRNA:   3'- gUAGCCGuu------CgaCCGGAGGuUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 25939 0.66 0.570252
Target:  5'- aCAUCGGCAAaa-GGUgcCCAACGCCg -3'
miRNA:   3'- -GUAGCCGUUcgaCCGgaGGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 53164 0.66 0.567055
Target:  5'- --cCGGCGuGaaGGCCUCCGgggacaggccgaccGCGCCg -3'
miRNA:   3'- guaGCCGUuCgaCCGGAGGU--------------UGCGGa -5'
19067 3' -57.9 NC_004684.1 + 62817 0.67 0.563863
Target:  5'- --gUGGCGAGUgcagcagcgccucgaUGGCCUCggcaaucagccaCAGCGCCg -3'
miRNA:   3'- guaGCCGUUCG---------------ACCGGAG------------GUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 29654 0.67 0.559614
Target:  5'- cCAUCuGGCcaacGAGCaGGCgCUCCAccuCGCCg -3'
miRNA:   3'- -GUAG-CCG----UUCGaCCG-GAGGUu--GCGGa -5'
19067 3' -57.9 NC_004684.1 + 62937 0.67 0.559614
Target:  5'- -cUCGcGCGcacguGC-GGCCUCCAgcuGCGCCa -3'
miRNA:   3'- guAGC-CGUu----CGaCCGGAGGU---UGCGGa -5'
19067 3' -57.9 NC_004684.1 + 15154 0.67 0.559614
Target:  5'- --gCGcGC-AGCUGGCCgCCGcCGCCa -3'
miRNA:   3'- guaGC-CGuUCGACCGGaGGUuGCGGa -5'
19067 3' -57.9 NC_004684.1 + 21826 0.67 0.559614
Target:  5'- uCAUgGGCGcgaucAGCcgGGCaUCCAugGCCg -3'
miRNA:   3'- -GUAgCCGU-----UCGa-CCGgAGGUugCGGa -5'
19067 3' -57.9 NC_004684.1 + 22833 0.67 0.559614
Target:  5'- --cCGGCGgugcaggccgGGCUGGCCaagaCCAGCaagGCCUg -3'
miRNA:   3'- guaGCCGU----------UCGACCGGa---GGUUG---CGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.