miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19067 5' -61.9 NC_004684.1 + 7880 0.67 0.366539
Target:  5'- cGCAGGCcuacgacGCGcccggugcuccguUGG-GGCCgCUGGCCgCGCa -3'
miRNA:   3'- -CGUUCG-------CGC-------------ACCaCCGG-GACCGG-GUG- -5'
19067 5' -61.9 NC_004684.1 + 22708 0.67 0.359979
Target:  5'- cGCAGGa-CGUGGccaaGGCCgUGGCUgGCa -3'
miRNA:   3'- -CGUUCgcGCACCa---CCGGgACCGGgUG- -5'
19067 5' -61.9 NC_004684.1 + 7295 0.67 0.359979
Target:  5'- -gGAGaacuuCGgGGUGGCCCggugaaGGCCCGCa -3'
miRNA:   3'- cgUUCgc---GCaCCACCGGGa-----CCGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 36869 0.67 0.359979
Target:  5'- -aAGGCGacaugcUGGUGGCCgUGGUCgGCa -3'
miRNA:   3'- cgUUCGCgc----ACCACCGGgACCGGgUG- -5'
19067 5' -61.9 NC_004684.1 + 40346 0.67 0.351895
Target:  5'- gGCAGGuCGC-UGGcggcGGCCUUGGCCUu- -3'
miRNA:   3'- -CGUUC-GCGcACCa---CCGGGACCGGGug -5'
19067 5' -61.9 NC_004684.1 + 4094 0.67 0.351895
Target:  5'- aGCucucGCGCGUGGUGcagggauacGCCCggcGGCuCCAg -3'
miRNA:   3'- -CGuu--CGCGCACCAC---------CGGGa--CCG-GGUg -5'
19067 5' -61.9 NC_004684.1 + 41974 0.67 0.351895
Target:  5'- cGCAAGgcguucuaugccCGCGcGGUGGCCgCUGGCgaCAa -3'
miRNA:   3'- -CGUUC------------GCGCaCCACCGG-GACCGg-GUg -5'
19067 5' -61.9 NC_004684.1 + 64941 0.67 0.343941
Target:  5'- gGUGAGCGCcUGGcgGGCggUGGCCCGg -3'
miRNA:   3'- -CGUUCGCGcACCa-CCGggACCGGGUg -5'
19067 5' -61.9 NC_004684.1 + 27624 0.67 0.343941
Target:  5'- aGCucaCGCGUGGUGGCgcaCCUcggugucgagGuGCCCACg -3'
miRNA:   3'- -CGuucGCGCACCACCG---GGA----------C-CGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 64292 0.68 0.328423
Target:  5'- ---cGCGCGcaGUGcGCCCUGGCCguCg -3'
miRNA:   3'- cguuCGCGCacCAC-CGGGACCGGguG- -5'
19067 5' -61.9 NC_004684.1 + 26733 0.68 0.313429
Target:  5'- cCGAGCGCGacUGGcggGGCCa-GGCCCcCa -3'
miRNA:   3'- cGUUCGCGC--ACCa--CCGGgaCCGGGuG- -5'
19067 5' -61.9 NC_004684.1 + 36011 0.68 0.306128
Target:  5'- gGCGAGCGUGaUGGUGGaCuCCUGcGCgaCCAg -3'
miRNA:   3'- -CGUUCGCGC-ACCACC-G-GGAC-CG--GGUg -5'
19067 5' -61.9 NC_004684.1 + 17694 0.68 0.306128
Target:  5'- cCGAGCGCGUgcccGGU-GCCCUGGacaCCGu -3'
miRNA:   3'- cGUUCGCGCA----CCAcCGGGACCg--GGUg -5'
19067 5' -61.9 NC_004684.1 + 62242 0.68 0.306128
Target:  5'- gGguAGCGCG-GcUGGUCCUG-CCCGCu -3'
miRNA:   3'- -CguUCGCGCaCcACCGGGACcGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 9208 0.68 0.298959
Target:  5'- aGUggGCGCGUgaccgGGUGGgCCaGGaCCCGa -3'
miRNA:   3'- -CGuuCGCGCA-----CCACCgGGaCC-GGGUg -5'
19067 5' -61.9 NC_004684.1 + 10248 0.68 0.298959
Target:  5'- gGCcguGCGCGUGGagcgGGCCaaccaaCUGGCCaGCg -3'
miRNA:   3'- -CGuu-CGCGCACCa---CCGG------GACCGGgUG- -5'
19067 5' -61.9 NC_004684.1 + 24524 0.68 0.298959
Target:  5'- cCGGGCGUGcGGcGGCCUgguUGGcCCCACc -3'
miRNA:   3'- cGUUCGCGCaCCaCCGGG---ACC-GGGUG- -5'
19067 5' -61.9 NC_004684.1 + 53669 0.68 0.29192
Target:  5'- cGCAGGCGCacacgGGUGGgCCggaacaccugguUGGCCgACc -3'
miRNA:   3'- -CGUUCGCGca---CCACCgGG------------ACCGGgUG- -5'
19067 5' -61.9 NC_004684.1 + 53396 0.68 0.285012
Target:  5'- uGCAc-CGUGUccaGGUGGCCgggCUGGCCUGCg -3'
miRNA:   3'- -CGUucGCGCA---CCACCGG---GACCGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 7229 0.68 0.285012
Target:  5'- -gGAGCGCGUggaGGUGuGCCC-GGUgCACc -3'
miRNA:   3'- cgUUCGCGCA---CCAC-CGGGaCCGgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.