miRNA: 3'- -GCGGA-----GUUG---CAUUAcAGCCACCGCgc -5'
miRNA: 3'- -GCGGAGUUGCauuacaGCCACCGcGC- -5'
miRNA: 3'- gCGG-AGuuGCAUUA-CAGCCA-CCGcGC- -5'
miRNA: 3'- gCGGa-GUUGCAU---UACAGCCA-------CCGCGc -5'
Results 41 - 44 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 19068 | 3' | -54.1 | NC_004684.1 | + | 43106 | 0.66 | 0.834116 |
|
Target: 5'- uCGCCUuccggCAGCucgGUGAUuUCGGUGGCGa- -3' miRNA: 3'- -GCGGA-----GUUG---CAUUAcAGCCACCGCgc -5' |
|||||||
| 19068 | 3' | -54.1 | NC_004684.1 | + | 4791 | 0.66 | 0.842816 |
|
Target: 5'- gCGCCUCGGCG------CGGUGGC-CGa -3' miRNA: 3'- -GCGGAGUUGCauuacaGCCACCGcGC- -5' |
|||||||
| 19068 | 3' | -54.1 | NC_004684.1 | + | 63546 | 0.66 | 0.8513 |
|
Target: 5'- uGCCuUCggUGUGGUcGUCGGUcGGCaCGc -3' miRNA: 3'- gCGG-AGuuGCAUUA-CAGCCA-CCGcGC- -5' |
|||||||
| 19068 | 3' | -54.1 | NC_004684.1 | + | 29935 | 0.65 | 0.858745 |
|
Target: 5'- aGCUgcCAGCGUGaagGUGUCGGUcaccuccGGUGCc -3' miRNA: 3'- gCGGa-GUUGCAU---UACAGCCA-------CCGCGc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home