miRNA display CGI


Results 21 - 40 of 299 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19068 5' -64.1 NC_004684.1 + 6904 0.66 0.332961
Target:  5'- uGGUGCGCCugCGCGacaucCCGCUcuACCu--- -3'
miRNA:   3'- -CCGCGCGGugGCGU-----GGCGG--UGGcguu -5'
19068 5' -64.1 NC_004684.1 + 4424 0.66 0.332961
Target:  5'- uGCGCaCCACCGaGCaCGCCACCa--- -3'
miRNA:   3'- cCGCGcGGUGGCgUG-GCGGUGGcguu -5'
19068 5' -64.1 NC_004684.1 + 43813 0.66 0.332961
Target:  5'- uGGCGCGCgCGCaGCGaggUCGCCAgguacucguccCCGCAc -3'
miRNA:   3'- -CCGCGCG-GUGgCGU---GGCGGU-----------GGCGUu -5'
19068 5' -64.1 NC_004684.1 + 15410 0.66 0.332961
Target:  5'- gGGCGCGaUgGCCGaCACCGUgGCCa--- -3'
miRNA:   3'- -CCGCGC-GgUGGC-GUGGCGgUGGcguu -5'
19068 5' -64.1 NC_004684.1 + 60328 0.66 0.332961
Target:  5'- cGCGCuGUCAUCaugcaCACCGCCAgCGCGu -3'
miRNA:   3'- cCGCG-CGGUGGc----GUGGCGGUgGCGUu -5'
19068 5' -64.1 NC_004684.1 + 15089 0.66 0.332203
Target:  5'- cGGCGCggugGCCGCCcuggagGCcgaccuuGCCGUCACCGgGAc -3'
miRNA:   3'- -CCGCG----CGGUGG------CG-------UGGCGGUGGCgUU- -5'
19068 5' -64.1 NC_004684.1 + 5934 0.66 0.332203
Target:  5'- cGCGCugGCCACCGgGCgGUCcaaccugGCCGCGc -3'
miRNA:   3'- cCGCG--CGGUGGCgUGgCGG-------UGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 16343 0.66 0.325439
Target:  5'- gGGCGCaucGUCACCG-GCgGUgGCCGCAu -3'
miRNA:   3'- -CCGCG---CGGUGGCgUGgCGgUGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 29663 0.66 0.325439
Target:  5'- cGUGCuCCugCGCGCgGCCgaccagACCGCGc -3'
miRNA:   3'- cCGCGcGGugGCGUGgCGG------UGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 11212 0.66 0.325439
Target:  5'- gGGCGCucgauagcGCCGCCGU--CGUCGCCGUc- -3'
miRNA:   3'- -CCGCG--------CGGUGGCGugGCGGUGGCGuu -5'
19068 5' -64.1 NC_004684.1 + 64343 0.66 0.325439
Target:  5'- cGGCGCGCCACCacccgggccucGUugUGCgGCCc--- -3'
miRNA:   3'- -CCGCGCGGUGG-----------CGugGCGgUGGcguu -5'
19068 5' -64.1 NC_004684.1 + 48708 0.66 0.325439
Target:  5'- aGCGUGCgGCgGCcCUGCCAgCGCu- -3'
miRNA:   3'- cCGCGCGgUGgCGuGGCGGUgGCGuu -5'
19068 5' -64.1 NC_004684.1 + 2368 0.66 0.325439
Target:  5'- uGGC-CGCCAUCGaCAUgGCCACCu--- -3'
miRNA:   3'- -CCGcGCGGUGGC-GUGgCGGUGGcguu -5'
19068 5' -64.1 NC_004684.1 + 28450 0.66 0.320987
Target:  5'- uGUGCGCCAgcccaucaacuggauCCaCGCCGCCgACUGCGc -3'
miRNA:   3'- cCGCGCGGU---------------GGcGUGGCGG-UGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 17416 0.66 0.318044
Target:  5'- uGGUGUGCCGgUGCACaGCgACgGCGGg -3'
miRNA:   3'- -CCGCGCGGUgGCGUGgCGgUGgCGUU- -5'
19068 5' -64.1 NC_004684.1 + 52618 0.66 0.318044
Target:  5'- uGUGCGCCAguacguCCaCGCCGCUgaucaggaACCGCGAc -3'
miRNA:   3'- cCGCGCGGU------GGcGUGGCGG--------UGGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 3881 0.66 0.318044
Target:  5'- uGCGaCGCCagGCCGCcCUGCUGgCGCAGg -3'
miRNA:   3'- cCGC-GCGG--UGGCGuGGCGGUgGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 11098 0.66 0.318044
Target:  5'- cGGCGCGCCaggGCCGgGCUgauGCCuuggauGCgCGCGAu -3'
miRNA:   3'- -CCGCGCGG---UGGCgUGG---CGG------UG-GCGUU- -5'
19068 5' -64.1 NC_004684.1 + 15820 0.66 0.318044
Target:  5'- cGGU-CGCCGCCGCGCagCGCgCACuggCGCAGa -3'
miRNA:   3'- -CCGcGCGGUGGCGUG--GCG-GUG---GCGUU- -5'
19068 5' -64.1 NC_004684.1 + 55741 0.66 0.318044
Target:  5'- uGCGCuccCCGuuGCACCGgC-CCGCAGa -3'
miRNA:   3'- cCGCGc--GGUggCGUGGCgGuGGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.