miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19069 3' -53.9 NC_004684.1 + 9149 0.66 0.844803
Target:  5'- -cGGCgCG-GCAGGUGCGGCAACu--- -3'
miRNA:   3'- acUCG-GCuCGUUCGCGCUGUUGuagc -5'
19069 3' -53.9 NC_004684.1 + 35541 0.66 0.844803
Target:  5'- cGGGCaCGAG-GAGcCGCGAUgAGCGUCa -3'
miRNA:   3'- aCUCG-GCUCgUUC-GCGCUG-UUGUAGc -5'
19069 3' -53.9 NC_004684.1 + 30843 0.66 0.844803
Target:  5'- cGAGCCGAugGuCAccAGCGCgguGACGGCAggCGa -3'
miRNA:   3'- aCUCGGCU--C-GU--UCGCG---CUGUUGUa-GC- -5'
19069 3' -53.9 NC_004684.1 + 18135 0.66 0.844803
Target:  5'- --uGCUGGGCGGcaaggaguucacGCuCGGCAACAUCGa -3'
miRNA:   3'- acuCGGCUCGUU------------CGcGCUGUUGUAGC- -5'
19069 3' -53.9 NC_004684.1 + 14129 0.66 0.844803
Target:  5'- gGAGCCGAuGaCAccggAGCGCGcCGGgAUCa -3'
miRNA:   3'- aCUCGGCU-C-GU----UCGCGCuGUUgUAGc -5'
19069 3' -53.9 NC_004684.1 + 30207 0.66 0.844803
Target:  5'- -uGGCCGcGCGcgucgaugcucGGCGCGACGugGcccUCGg -3'
miRNA:   3'- acUCGGCuCGU-----------UCGCGCUGUugU---AGC- -5'
19069 3' -53.9 NC_004684.1 + 55813 0.66 0.843069
Target:  5'- gUGAGCgCGuGCGAGCacggggugccggugaGCGgguacugcgugcaguGCGACGUCGa -3'
miRNA:   3'- -ACUCG-GCuCGUUCG---------------CGC---------------UGUUGUAGC- -5'
19069 3' -53.9 NC_004684.1 + 15446 0.66 0.836045
Target:  5'- gGAGCCGGuGC---UGCGACGuaaguGCGUCGa -3'
miRNA:   3'- aCUCGGCU-CGuucGCGCUGU-----UGUAGC- -5'
19069 3' -53.9 NC_004684.1 + 21509 0.66 0.836045
Target:  5'- --cGCCGccAGCGuggacGGCGCGcACAugAUCGc -3'
miRNA:   3'- acuCGGC--UCGU-----UCGCGC-UGUugUAGC- -5'
19069 3' -53.9 NC_004684.1 + 54636 0.66 0.836045
Target:  5'- cGcAGCCGcGCGGGCcaaGAgGGCGUCGa -3'
miRNA:   3'- aC-UCGGCuCGUUCGcg-CUgUUGUAGC- -5'
19069 3' -53.9 NC_004684.1 + 19340 0.66 0.836045
Target:  5'- -uGGCCGAGCGggaGGCGCuGAucCAGCggCGc -3'
miRNA:   3'- acUCGGCUCGU---UCGCG-CU--GUUGuaGC- -5'
19069 3' -53.9 NC_004684.1 + 10774 0.66 0.836045
Target:  5'- nGuGCCc-GCGAcaccCGCGACGGCGUCGg -3'
miRNA:   3'- aCuCGGcuCGUUc---GCGCUGUUGUAGC- -5'
19069 3' -53.9 NC_004684.1 + 9621 0.66 0.835157
Target:  5'- cGcGCCGuGCAGGCGCuGAacaugaacauuccCGGCAUCc -3'
miRNA:   3'- aCuCGGCuCGUUCGCG-CU-------------GUUGUAGc -5'
19069 3' -53.9 NC_004684.1 + 33536 0.66 0.827072
Target:  5'- gGGGUCGuacGGCAccguccuguugaGGCGCGGCGucgACAUCc -3'
miRNA:   3'- aCUCGGC---UCGU------------UCGCGCUGU---UGUAGc -5'
19069 3' -53.9 NC_004684.1 + 34084 0.66 0.827072
Target:  5'- -uGGCgCG-GCGGGCGCGaACAACG-CGa -3'
miRNA:   3'- acUCG-GCuCGUUCGCGC-UGUUGUaGC- -5'
19069 3' -53.9 NC_004684.1 + 27171 0.66 0.817895
Target:  5'- gUGGGCCGGGUAcguguucgucaAGCuccuggucaGCGACAGCGa-- -3'
miRNA:   3'- -ACUCGGCUCGU-----------UCG---------CGCUGUUGUagc -5'
19069 3' -53.9 NC_004684.1 + 19779 0.66 0.817895
Target:  5'- cGAcGCCGAGUAccgacggcgguGUGCGGCcuACAUCGc -3'
miRNA:   3'- aCU-CGGCUCGUu----------CGCGCUGu-UGUAGC- -5'
19069 3' -53.9 NC_004684.1 + 27350 0.66 0.817895
Target:  5'- aGAGCCGuGCGAGgGgGAuCGGCccgGUCu -3'
miRNA:   3'- aCUCGGCuCGUUCgCgCU-GUUG---UAGc -5'
19069 3' -53.9 NC_004684.1 + 42000 0.66 0.817895
Target:  5'- -uGGCCGccGCuguGCGCGGCGGCGUa- -3'
miRNA:   3'- acUCGGCu-CGuu-CGCGCUGUUGUAgc -5'
19069 3' -53.9 NC_004684.1 + 47185 0.66 0.817895
Target:  5'- aGGGCCGccGCu-GCGCGGCgAACGgugCGg -3'
miRNA:   3'- aCUCGGCu-CGuuCGCGCUG-UUGUa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.