miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19069 5' -53.2 NC_004684.1 + 46557 0.66 0.813571
Target:  5'- aCGcCGGUGCGCUUGGUGCcggAUUCccaGUCGc -3'
miRNA:   3'- -GC-GCUACGCGAGUCGCG---UAAG---UAGUu -5'
19069 5' -53.2 NC_004684.1 + 23207 0.66 0.812615
Target:  5'- cCGCGAgGUGCU-GGCGCgcgccggGUUCAUCGc -3'
miRNA:   3'- -GCGCUaCGCGAgUCGCG-------UAAGUAGUu -5'
19069 5' -53.2 NC_004684.1 + 42511 0.66 0.802947
Target:  5'- aCGCGAUcaacggcGCGCUCAcCGCcgUgGUCGg -3'
miRNA:   3'- -GCGCUA-------CGCGAGUcGCGuaAgUAGUu -5'
19069 5' -53.2 NC_004684.1 + 37267 0.67 0.784074
Target:  5'- gCGCGGUGCcuguaGCUC-GCGCAggCGUUg- -3'
miRNA:   3'- -GCGCUACG-----CGAGuCGCGUaaGUAGuu -5'
19069 5' -53.2 NC_004684.1 + 25496 0.67 0.773898
Target:  5'- uCGCGGUcgGC-CAGCGCGUUCAUg-- -3'
miRNA:   3'- -GCGCUAcgCGaGUCGCGUAAGUAguu -5'
19069 5' -53.2 NC_004684.1 + 2140 0.67 0.763569
Target:  5'- uGCG-UGCGUUCGGCGCGUcgGUgAAc -3'
miRNA:   3'- gCGCuACGCGAGUCGCGUAagUAgUU- -5'
19069 5' -53.2 NC_004684.1 + 23790 0.67 0.753101
Target:  5'- gCGCGAUGa--UCGGCGCuggCGUCAc -3'
miRNA:   3'- -GCGCUACgcgAGUCGCGuaaGUAGUu -5'
19069 5' -53.2 NC_004684.1 + 35360 0.67 0.753101
Target:  5'- aCGCGGUGCcaGCUguGgGCGUUCccgCAAc -3'
miRNA:   3'- -GCGCUACG--CGAguCgCGUAAGua-GUU- -5'
19069 5' -53.2 NC_004684.1 + 57070 0.68 0.742504
Target:  5'- gGCGGccUGCGUUgCGGCGCGcaCAUCGGu -3'
miRNA:   3'- gCGCU--ACGCGA-GUCGCGUaaGUAGUU- -5'
19069 5' -53.2 NC_004684.1 + 52450 0.68 0.742504
Target:  5'- gGCucgGCGCagUCAGCGCAcacUCGUCAAa -3'
miRNA:   3'- gCGcuaCGCG--AGUCGCGUa--AGUAGUU- -5'
19069 5' -53.2 NC_004684.1 + 55037 0.68 0.720975
Target:  5'- gGUGGUGCGCagugugccCAGCGCggUgAUCAAg -3'
miRNA:   3'- gCGCUACGCGa-------GUCGCGuaAgUAGUU- -5'
19069 5' -53.2 NC_004684.1 + 8136 0.68 0.688025
Target:  5'- cCGCGucgGUGCUCgGGUGCAgcagaUCGUCAAc -3'
miRNA:   3'- -GCGCua-CGCGAG-UCGCGUa----AGUAGUU- -5'
19069 5' -53.2 NC_004684.1 + 66251 0.68 0.688025
Target:  5'- -aCGAUcagcGUGCUCAGCGCGgcgUCGUCc- -3'
miRNA:   3'- gcGCUA----CGCGAGUCGCGUa--AGUAGuu -5'
19069 5' -53.2 NC_004684.1 + 60878 0.71 0.5432
Target:  5'- gGCGAUGCGCaccuccUCGGCcuccaGUUCAUCGAc -3'
miRNA:   3'- gCGCUACGCG------AGUCGcg---UAAGUAGUU- -5'
19069 5' -53.2 NC_004684.1 + 65810 0.71 0.519369
Target:  5'- aCGCug-GCGCUCAGCGCAgacaggcgcacCAUCAGc -3'
miRNA:   3'- -GCGcuaCGCGAGUCGCGUaa---------GUAGUU- -5'
19069 5' -53.2 NC_004684.1 + 26343 0.83 0.105263
Target:  5'- aCGCGGUGCGCUCGGC-CAUUcCGUCGGg -3'
miRNA:   3'- -GCGCUACGCGAGUCGcGUAA-GUAGUU- -5'
19069 5' -53.2 NC_004684.1 + 19860 1.07 0.00238
Target:  5'- gCGCGAUGCGCUCAGCGCAUUCAUCAAg -3'
miRNA:   3'- -GCGCUACGCGAGUCGCGUAAGUAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.