miRNA display CGI


Results 41 - 53 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 3' -56.4 NC_004684.1 + 41905 0.67 0.657033
Target:  5'- ---gCUGGCCGACcgGACGaCAUcgugGCCGu -3'
miRNA:   3'- guagGACCGGCUGa-CUGC-GUGa---UGGC- -5'
19071 3' -56.4 NC_004684.1 + 50584 0.69 0.529191
Target:  5'- --aCCUGGCgCGAaUGGCGCGCccACCa -3'
miRNA:   3'- guaGGACCG-GCUgACUGCGUGa-UGGc -5'
19071 3' -56.4 NC_004684.1 + 52751 0.69 0.528154
Target:  5'- uCGUCgUGGCCG-CUGGCGCAgUcguugacGCCc -3'
miRNA:   3'- -GUAGgACCGGCuGACUGCGUgA-------UGGc -5'
19071 3' -56.4 NC_004684.1 + 53403 0.68 0.592553
Target:  5'- uGUCCaggUGGCCgGGCUGgccugcgccGCGCgACUGCCa -3'
miRNA:   3'- gUAGG---ACCGG-CUGAC---------UGCG-UGAUGGc -5'
19071 3' -56.4 NC_004684.1 + 54477 0.67 0.624766
Target:  5'- ---gUUGGCCGAC-GGCGCACcggcACCGc -3'
miRNA:   3'- guagGACCGGCUGaCUGCGUGa---UGGC- -5'
19071 3' -56.4 NC_004684.1 + 56160 0.72 0.358286
Target:  5'- --cCCUGGCCGAC-GACggcgacgacggcgGCGCUAUCGa -3'
miRNA:   3'- guaGGACCGGCUGaCUG-------------CGUGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 56355 0.66 0.710233
Target:  5'- gCGUCCUccaccacGCCGA-UGACGUaACUGCCGc -3'
miRNA:   3'- -GUAGGAc------CGGCUgACUGCG-UGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 56680 0.66 0.731074
Target:  5'- --gCCUGGCgGuGCUGGCGCAgaaGCUGg -3'
miRNA:   3'- guaGGACCGgC-UGACUGCGUga-UGGC- -5'
19071 3' -56.4 NC_004684.1 + 58962 0.69 0.518854
Target:  5'- --cCCUGGcCCGGCgGGCGCGCggguuCCa -3'
miRNA:   3'- guaGGACC-GGCUGaCUGCGUGau---GGc -5'
19071 3' -56.4 NC_004684.1 + 62679 0.67 0.62907
Target:  5'- gGUCCUGGCCGuagcaggccagaaUGAUGCGCgcguUCGg -3'
miRNA:   3'- gUAGGACCGGCug-----------ACUGCGUGau--GGC- -5'
19071 3' -56.4 NC_004684.1 + 63181 0.66 0.6891
Target:  5'- --gCCgGGUCGACUcGACGCG--GCCGa -3'
miRNA:   3'- guaGGaCCGGCUGA-CUGCGUgaUGGC- -5'
19071 3' -56.4 NC_004684.1 + 65109 0.67 0.635528
Target:  5'- gCGUCgUGGCCcaGGCUGGCgGCAaUGCCc -3'
miRNA:   3'- -GUAGgACCGG--CUGACUG-CGUgAUGGc -5'
19071 3' -56.4 NC_004684.1 + 65615 0.67 0.657033
Target:  5'- gCGUCCUGGuuGGCguccagccACGCGCgcagcuCCGg -3'
miRNA:   3'- -GUAGGACCggCUGac------UGCGUGau----GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.