Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19071 | 3' | -56.4 | NC_004684.1 | + | 1375 | 0.67 | 0.645211 |
Target: 5'- aCAcCCUGGCCGACgccaaGGCcgccguuGCACUgGCCa -3' miRNA: 3'- -GUaGGACCGGCUGa----CUG-------CGUGA-UGGc -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 22112 | 0.66 | 0.710233 |
Target: 5'- -uUCCUguGGCCGGaaaccgGACGCAaggGCCGc -3' miRNA: 3'- guAGGA--CCGGCUga----CUGCGUga-UGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 7937 | 0.69 | 0.539603 |
Target: 5'- aCAUCgccGCCGACcGGCGCAC-ACCGg -3' miRNA: 3'- -GUAGgacCGGCUGaCUGCGUGaUGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 3076 | 0.67 | 0.661326 |
Target: 5'- --aCCUGGCgguguucaaccaccaCGACggccagGGCGCACUGCgCGc -3' miRNA: 3'- guaGGACCG---------------GCUGa-----CUGCGUGAUG-GC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 36078 | 0.66 | 0.6891 |
Target: 5'- aCGUCCUGGCUGGuCUGccCGguC-ACCGa -3' miRNA: 3'- -GUAGGACCGGCU-GACu-GCguGaUGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 56355 | 0.66 | 0.710233 |
Target: 5'- gCGUCCUccaccacGCCGA-UGACGUaACUGCCGc -3' miRNA: 3'- -GUAGGAc------CGGCUgACUGCG-UGAUGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 65109 | 0.67 | 0.635528 |
Target: 5'- gCGUCgUGGCCcaGGCUGGCgGCAaUGCCc -3' miRNA: 3'- -GUAGgACCGG--CUGACUG-CGUgAUGGc -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 37691 | 0.67 | 0.667757 |
Target: 5'- gGUUCUGGCCcacGACguUGACGCGCgcacGCgCGg -3' miRNA: 3'- gUAGGACCGG---CUG--ACUGCGUGa---UG-GC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 13460 | 0.67 | 0.667757 |
Target: 5'- --gCCUGGCCGACacggUGAcccCGCACcucGCCu -3' miRNA: 3'- guaGGACCGGCUG----ACU---GCGUGa--UGGc -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 20425 | 0.68 | 0.560626 |
Target: 5'- -cUCCUGGCgcaucaGcCUGGCGCugUGCaCGg -3' miRNA: 3'- guAGGACCGg-----CuGACUGCGugAUG-GC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 39775 | 0.77 | 0.178088 |
Target: 5'- gCGUCCUGGCCGuuCUcGAUGCGCUgguagcugcGCCGg -3' miRNA: 3'- -GUAGGACCGGCu-GA-CUGCGUGA---------UGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 23712 | 0.66 | 0.698641 |
Target: 5'- --aCCUGGgCGGC-GGCGCGCUcaacaucGCUGg -3' miRNA: 3'- guaGGACCgGCUGaCUGCGUGA-------UGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 9291 | 0.7 | 0.458714 |
Target: 5'- -uUCCcgacGCCGACgGugGCGCUACCc -3' miRNA: 3'- guAGGac--CGGCUGaCugCGUGAUGGc -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 23635 | 0.66 | 0.731074 |
Target: 5'- uGUCCcGGCCuuGCUGGCacCGCUGCUGa -3' miRNA: 3'- gUAGGaCCGGc-UGACUGc-GUGAUGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 7483 | 0.7 | 0.467506 |
Target: 5'- aCGUUUUGGCCuGGCUGguugucuACGCGCUgGCCGc -3' miRNA: 3'- -GUAGGACCGG-CUGAC-------UGCGUGA-UGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 56680 | 0.66 | 0.731074 |
Target: 5'- --gCCUGGCgGuGCUGGCGCAgaaGCUGg -3' miRNA: 3'- guaGGACCGgC-UGACUGCGUga-UGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 3978 | 0.67 | 0.62369 |
Target: 5'- uCAUCCUGGCCGguggcaGCUccagucGAUGUgcgcccaccaccuGCUGCCGu -3' miRNA: 3'- -GUAGGACCGGC------UGA------CUGCG-------------UGAUGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 36929 | 0.66 | 0.6891 |
Target: 5'- gGUCgaGGCCGGgUGgacACGC-CUGCUGg -3' miRNA: 3'- gUAGgaCCGGCUgAC---UGCGuGAUGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 629 | 0.68 | 0.571223 |
Target: 5'- --aCCUGGCCGACga--GCACggcgACCc -3' miRNA: 3'- guaGGACCGGCUGacugCGUGa---UGGc -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 33085 | 0.69 | 0.529191 |
Target: 5'- --aUCUGuCCGGC-GugGCGCUGCCGa -3' miRNA: 3'- guaGGACcGGCUGaCugCGUGAUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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