miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 3' -56.4 NC_004684.1 + 17070 0.67 0.635528
Target:  5'- cCcgCCUGGCCG---GGCGCACcgACUGg -3'
miRNA:   3'- -GuaGGACCGGCugaCUGCGUGa-UGGC- -5'
19071 3' -56.4 NC_004684.1 + 62679 0.67 0.62907
Target:  5'- gGUCCUGGCCGuagcaggccagaaUGAUGCGCgcguUCGg -3'
miRNA:   3'- gUAGGACCGGCug-----------ACUGCGUGau--GGC- -5'
19071 3' -56.4 NC_004684.1 + 54477 0.67 0.624766
Target:  5'- ---gUUGGCCGAC-GGCGCACcggcACCGc -3'
miRNA:   3'- guagGACCGGCUGaCUGCGUGa---UGGC- -5'
19071 3' -56.4 NC_004684.1 + 3978 0.67 0.62369
Target:  5'- uCAUCCUGGCCGguggcaGCUccagucGAUGUgcgcccaccaccuGCUGCCGu -3'
miRNA:   3'- -GUAGGACCGGC------UGA------CUGCG-------------UGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 53403 0.68 0.592553
Target:  5'- uGUCCaggUGGCCgGGCUGgccugcgccGCGCgACUGCCa -3'
miRNA:   3'- gUAGG---ACCGG-CUGAC---------UGCG-UGAUGGc -5'
19071 3' -56.4 NC_004684.1 + 23503 0.68 0.591483
Target:  5'- uCAUCCaccugcccagcgaUGcGCCGAacaUGGCGCacauGCUGCCGa -3'
miRNA:   3'- -GUAGG-------------AC-CGGCUg--ACUGCG----UGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 33655 0.68 0.571223
Target:  5'- gCGUCCUGGCCGcGCUG-CGUcgaguaguucggGCcACCGc -3'
miRNA:   3'- -GUAGGACCGGC-UGACuGCG------------UGaUGGC- -5'
19071 3' -56.4 NC_004684.1 + 629 0.68 0.571223
Target:  5'- --aCCUGGCCGACga--GCACggcgACCc -3'
miRNA:   3'- guaGGACCGGCUGacugCGUGa---UGGc -5'
19071 3' -56.4 NC_004684.1 + 20425 0.68 0.560626
Target:  5'- -cUCCUGGCgcaucaGcCUGGCGCugUGCaCGg -3'
miRNA:   3'- guAGGACCGg-----CuGACUGCGugAUG-GC- -5'
19071 3' -56.4 NC_004684.1 + 7937 0.69 0.539603
Target:  5'- aCAUCgccGCCGACcGGCGCAC-ACCGg -3'
miRNA:   3'- -GUAGgacCGGCUGaCUGCGUGaUGGC- -5'
19071 3' -56.4 NC_004684.1 + 27520 0.69 0.539603
Target:  5'- --gCCUGGgCGAgCUGAUGCGC-GCCa -3'
miRNA:   3'- guaGGACCgGCU-GACUGCGUGaUGGc -5'
19071 3' -56.4 NC_004684.1 + 33085 0.69 0.529191
Target:  5'- --aUCUGuCCGGC-GugGCGCUGCCGa -3'
miRNA:   3'- guaGGACcGGCUGaCugCGUGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 50584 0.69 0.529191
Target:  5'- --aCCUGGCgCGAaUGGCGCGCccACCa -3'
miRNA:   3'- guaGGACCG-GCUgACUGCGUGa-UGGc -5'
19071 3' -56.4 NC_004684.1 + 52751 0.69 0.528154
Target:  5'- uCGUCgUGGCCG-CUGGCGCAgUcguugacGCCc -3'
miRNA:   3'- -GUAGgACCGGCuGACUGCGUgA-------UGGc -5'
19071 3' -56.4 NC_004684.1 + 13779 0.69 0.528154
Target:  5'- uGUCCgGGCCGcgcguGCUcaagagcGGCGCACUGuCCGa -3'
miRNA:   3'- gUAGGaCCGGC-----UGA-------CUGCGUGAU-GGC- -5'
19071 3' -56.4 NC_004684.1 + 58962 0.69 0.518854
Target:  5'- --cCCUGGcCCGGCgGGCGCGCggguuCCa -3'
miRNA:   3'- guaGGACC-GGCUGaCUGCGUGau---GGc -5'
19071 3' -56.4 NC_004684.1 + 5990 0.69 0.518854
Target:  5'- aGUCCcGGCCuGGCUcaGGCGCACcAUCGg -3'
miRNA:   3'- gUAGGaCCGG-CUGA--CUGCGUGaUGGC- -5'
19071 3' -56.4 NC_004684.1 + 2061 0.69 0.508597
Target:  5'- cCAUCgUGGCCuGcCUGGCGCug-GCCGu -3'
miRNA:   3'- -GUAGgACCGG-CuGACUGCGugaUGGC- -5'
19071 3' -56.4 NC_004684.1 + 5599 0.69 0.508597
Target:  5'- --gCCgacggGGCCGAgCUGGCGCGCauggUGCUGg -3'
miRNA:   3'- guaGGa----CCGGCU-GACUGCGUG----AUGGC- -5'
19071 3' -56.4 NC_004684.1 + 4413 0.7 0.488349
Target:  5'- aGUCCUGGCCGcCggaacaACGCGCggGCCu -3'
miRNA:   3'- gUAGGACCGGCuGac----UGCGUGa-UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.