miRNA display CGI


Results 41 - 60 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 31934 0.66 0.754237
Target:  5'- gUCCGGcCCGGC-CGCAACGguCGcCCGCu -3'
miRNA:   3'- -AGGCC-GGUUGcGCGUUGU--GUuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 62932 0.66 0.764423
Target:  5'- -aCGGCCucGCGCGCAcguGCGGCCucCAg -3'
miRNA:   3'- agGCCGGu-UGCGCGUug-UGUUGGu-GU- -5'
19071 5' -54.9 NC_004684.1 + 26293 0.66 0.784381
Target:  5'- cUCGGCCAuCGguaCGCAGCuCGGCCAg- -3'
miRNA:   3'- aGGCCGGUuGC---GCGUUGuGUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 11528 0.66 0.754237
Target:  5'- cCCGGCCAccuuggcgucgACGuCGCAcugcACGCAGuacCCGCu -3'
miRNA:   3'- aGGCCGGU-----------UGC-GCGU----UGUGUU---GGUGu -5'
19071 5' -54.9 NC_004684.1 + 53716 0.66 0.760364
Target:  5'- aCCGGCCAccauguccuggacCGUGCGcCACGagacACCACGc -3'
miRNA:   3'- aGGCCGGUu------------GCGCGUuGUGU----UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 33718 0.66 0.751157
Target:  5'- -gCGGCgGugGCccgaacuacucgacGCAGCGCGGCCAgGa -3'
miRNA:   3'- agGCCGgUugCG--------------CGUUGUGUUGGUgU- -5'
19071 5' -54.9 NC_004684.1 + 34088 0.66 0.794132
Target:  5'- -gCGGCgGGCGCGaaCAACGCGAgUGCGc -3'
miRNA:   3'- agGCCGgUUGCGC--GUUGUGUUgGUGU- -5'
19071 5' -54.9 NC_004684.1 + 55641 0.66 0.774475
Target:  5'- uUUCGGCUGGCGUGCGugGaggagGGCCugGc -3'
miRNA:   3'- -AGGCCGGUUGCGCGUugUg----UUGGugU- -5'
19071 5' -54.9 NC_004684.1 + 25319 0.66 0.774475
Target:  5'- gUCGGCCcuGGCgGCGUAugGCGGCCu-- -3'
miRNA:   3'- aGGCCGG--UUG-CGCGUugUGUUGGugu -5'
19071 5' -54.9 NC_004684.1 + 29652 0.66 0.783398
Target:  5'- aCC-GCCAacgacgugcuccuGCGCGCGGC-CGACCAg- -3'
miRNA:   3'- aGGcCGGU-------------UGCGCGUUGuGUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 19469 0.66 0.771474
Target:  5'- -gUGGCC--CGCGCGACAugcgccccuggagcCAGCCGCu -3'
miRNA:   3'- agGCCGGuuGCGCGUUGU--------------GUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 57691 0.66 0.753211
Target:  5'- aUCGGCCAGgcauggcUGCGCAACGagauGGCCAa- -3'
miRNA:   3'- aGGCCGGUU-------GCGCGUUGUg---UUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 22723 0.66 0.754237
Target:  5'- --aGGCCGugGCugGCAcGCGCGACCGg- -3'
miRNA:   3'- aggCCGGUugCG--CGU-UGUGUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 48790 0.66 0.754237
Target:  5'- gCgGGCCGAUGaUGCAGgACAgGCCGCc -3'
miRNA:   3'- aGgCCGGUUGC-GCGUUgUGU-UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 992 0.66 0.784381
Target:  5'- cUCGGCCAGCaccaagGUGCGgagauuuccaccGCGCAGCuCGCGg -3'
miRNA:   3'- aGGCCGGUUG------CGCGU------------UGUGUUG-GUGU- -5'
19071 5' -54.9 NC_004684.1 + 60320 0.66 0.794132
Target:  5'- cUCGG-CAAUGCGUucgAGCGCGAUCACc -3'
miRNA:   3'- aGGCCgGUUGCGCG---UUGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 13265 0.66 0.751157
Target:  5'- aCC-GCCAGCGCGCugguggccgccgguGGCugGugCGCGc -3'
miRNA:   3'- aGGcCGGUUGCGCG--------------UUGugUugGUGU- -5'
19071 5' -54.9 NC_004684.1 + 476 0.66 0.754237
Target:  5'- aCCgGGCCAGCGaggucgGCAGCACcgacAACgACAc -3'
miRNA:   3'- aGG-CCGGUUGCg-----CGUUGUG----UUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 58113 0.66 0.794132
Target:  5'- -aUGGCCGGgucCGCGaaCAACGCGACCGg- -3'
miRNA:   3'- agGCCGGUU---GCGC--GUUGUGUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 34666 0.66 0.784381
Target:  5'- aUCCggcaGGCCAACGCGa---GCAACCc-- -3'
miRNA:   3'- -AGG----CCGGUUGCGCguugUGUUGGugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.