miRNA display CGI


Results 81 - 100 of 342 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 61115 0.67 0.709178
Target:  5'- gCUGGCCAGCuacgacaccaagauGgGCGACGCGcACUGCAu -3'
miRNA:   3'- aGGCCGGUUG--------------CgCGUUGUGU-UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 839 0.67 0.722987
Target:  5'- uUCCGGUgaGGCGCaCAACGCcuACCGCc -3'
miRNA:   3'- -AGGCCGg-UUGCGcGUUGUGu-UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 40935 0.67 0.722987
Target:  5'- gUCgCGGCCAgGCGUGCcgccguACACcgGGCCACc -3'
miRNA:   3'- -AG-GCCGGU-UGCGCGu-----UGUG--UUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 1518 0.67 0.701689
Target:  5'- gCCGcGCuCAACgGCGaCGACGCGACCcuGCGc -3'
miRNA:   3'- aGGC-CG-GUUG-CGC-GUUGUGUUGG--UGU- -5'
19071 5' -54.9 NC_004684.1 + 58034 0.67 0.701689
Target:  5'- gUCCGGCUccuCGCGCcggGACGCA-CCGgAg -3'
miRNA:   3'- -AGGCCGGuu-GCGCG---UUGUGUuGGUgU- -5'
19071 5' -54.9 NC_004684.1 + 25966 0.67 0.701689
Target:  5'- gCUGGCCAAgcuggUGCGCGAagGCAACC-CGc -3'
miRNA:   3'- aGGCCGGUU-----GCGCGUUg-UGUUGGuGU- -5'
19071 5' -54.9 NC_004684.1 + 29861 0.67 0.701689
Target:  5'- gCCGGUCAccauCGCGCAGCucaugccuuCAGCC-CGg -3'
miRNA:   3'- aGGCCGGUu---GCGCGUUGu--------GUUGGuGU- -5'
19071 5' -54.9 NC_004684.1 + 50280 0.67 0.722987
Target:  5'- gCUGGCCAGCGCcaGGCcCGACgGCGa -3'
miRNA:   3'- aGGCCGGUUGCGcgUUGuGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 5597 0.67 0.722987
Target:  5'- --aGGCCuuCGC-CAcCGCGACCACGu -3'
miRNA:   3'- aggCCGGuuGCGcGUuGUGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 10014 0.67 0.722987
Target:  5'- gCCGGaCCugccGCGCGCcgaccgggAGCGCAucaucGCCACGc -3'
miRNA:   3'- aGGCC-GGu---UGCGCG--------UUGUGU-----UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 62183 0.67 0.712377
Target:  5'- cCCGGCCGAUGaugGCgAACACGuuGCCGu- -3'
miRNA:   3'- aGGCCGGUUGCg--CG-UUGUGU--UGGUgu -5'
19071 5' -54.9 NC_004684.1 + 57964 0.67 0.727207
Target:  5'- -gCGGCUggUGCGCAcgcugcuggccgaggACAUGACCAa- -3'
miRNA:   3'- agGCCGGuuGCGCGU---------------UGUGUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 10399 0.67 0.733508
Target:  5'- gCC-GCCAGCGUGCAG---AACCACGc -3'
miRNA:   3'- aGGcCGGUUGCGCGUUgugUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 7511 0.67 0.733508
Target:  5'- gCUGGCCGccGCGCGCGugACccGACUg-- -3'
miRNA:   3'- aGGCCGGU--UGCGCGUugUG--UUGGugu -5'
19071 5' -54.9 NC_004684.1 + 10730 0.67 0.733508
Target:  5'- gCCaGGCCGACGagaucgaGCGGCGCAAgCgaGCAg -3'
miRNA:   3'- aGG-CCGGUUGCg------CGUUGUGUUgG--UGU- -5'
19071 5' -54.9 NC_004684.1 + 39662 0.67 0.733508
Target:  5'- aCCGGCCucCGCGUGccucgugcucGCGCucgGCCGCc -3'
miRNA:   3'- aGGCCGGuuGCGCGU----------UGUGu--UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 65629 0.67 0.733508
Target:  5'- gUCCaGCCAcGCGCGCAGCuccgguccCGACCuACc -3'
miRNA:   3'- -AGGcCGGU-UGCGCGUUGu-------GUUGG-UGu -5'
19071 5' -54.9 NC_004684.1 + 52236 0.67 0.733508
Target:  5'- aUCaGGCCGugGUGC--CACAGCgGCGg -3'
miRNA:   3'- -AGgCCGGUugCGCGuuGUGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 50791 0.67 0.743928
Target:  5'- -gCGGUCggUGCGCAACAUGAagucgUCGCGc -3'
miRNA:   3'- agGCCGGuuGCGCGUUGUGUU-----GGUGU- -5'
19071 5' -54.9 NC_004684.1 + 4910 0.67 0.722987
Target:  5'- aCCGGCCu-CG-GCGGCACcAUCACc -3'
miRNA:   3'- aGGCCGGuuGCgCGUUGUGuUGGUGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.