miRNA display CGI


Results 101 - 120 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 64830 0.67 0.713442
Target:  5'- aCCGGCCucggcgaaggccuccGCGCGCuccacGCAgGugCGCAg -3'
miRNA:   3'- aGGCCGGu--------------UGCGCGu----UGUgUugGUGU- -5'
19071 5' -54.9 NC_004684.1 + 38543 0.67 0.712377
Target:  5'- aCCGGgaGACGC-CAGCGCucgucguACCACAu -3'
miRNA:   3'- aGGCCggUUGCGcGUUGUGu------UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 10730 0.67 0.733508
Target:  5'- gCCaGGCCGACGagaucgaGCGGCGCAAgCgaGCAg -3'
miRNA:   3'- aGG-CCGGUUGCg------CGUUGUGUUgG--UGU- -5'
19071 5' -54.9 NC_004684.1 + 65629 0.67 0.733508
Target:  5'- gUCCaGCCAcGCGCGCAGCuccgguccCGACCuACc -3'
miRNA:   3'- -AGGcCGGU-UGCGCGUUGu-------GUUGG-UGu -5'
19071 5' -54.9 NC_004684.1 + 52236 0.67 0.733508
Target:  5'- aUCaGGCCGugGUGC--CACAGCgGCGg -3'
miRNA:   3'- -AGgCCGGUugCGCGuuGUGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 50791 0.67 0.743928
Target:  5'- -gCGGUCggUGCGCAACAUGAagucgUCGCGc -3'
miRNA:   3'- agGCCGGuuGCGCGUUGUGUU-----GGUGU- -5'
19071 5' -54.9 NC_004684.1 + 58685 0.67 0.748065
Target:  5'- cCCcGUCGAcCGUGCGgcuaacagaccucacGCACGGCCACAg -3'
miRNA:   3'- aGGcCGGUU-GCGCGU---------------UGUGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 14347 0.67 0.743928
Target:  5'- aUCgCGuaCAACGcCGaCAACGCGACCAUc -3'
miRNA:   3'- -AG-GCcgGUUGC-GC-GUUGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 15403 0.67 0.722987
Target:  5'- aCCGGCagGGCGCGauggcCGACACcguGGCCACc -3'
miRNA:   3'- aGGCCGg-UUGCGC-----GUUGUG---UUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 839 0.67 0.722987
Target:  5'- uUCCGGUgaGGCGCaCAACGCcuACCGCc -3'
miRNA:   3'- -AGGCCGg-UUGCGcGUUGUGu-UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 21086 0.67 0.742891
Target:  5'- gCUGGCgCAcgccaaGCGcCGCAACGCGcucggccGCCGCGa -3'
miRNA:   3'- aGGCCG-GU------UGC-GCGUUGUGU-------UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 9890 0.67 0.742891
Target:  5'- aUCCGGCgCAggcaccuGCGUGCGGCGCuuguCgACGg -3'
miRNA:   3'- -AGGCCG-GU-------UGCGCGUUGUGuu--GgUGU- -5'
19071 5' -54.9 NC_004684.1 + 22240 0.67 0.722987
Target:  5'- cCCGcGCgauCAACGCGCAgGCGCGAgCAUg -3'
miRNA:   3'- aGGC-CG---GUUGCGCGU-UGUGUUgGUGu -5'
19071 5' -54.9 NC_004684.1 + 17654 0.67 0.733508
Target:  5'- cUCCGuGCCgAGCGUGCcGCugAguuugaacGCCGCGc -3'
miRNA:   3'- -AGGC-CGG-UUGCGCGuUGugU--------UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 17074 0.67 0.733508
Target:  5'- cCUGGCCGG-GCGCAccgACugGGCaCGCGu -3'
miRNA:   3'- aGGCCGGUUgCGCGU---UGugUUG-GUGU- -5'
19071 5' -54.9 NC_004684.1 + 11373 0.67 0.733508
Target:  5'- -gUGGCCAGCagcguggugguGCGCGACuu-GCCGCGc -3'
miRNA:   3'- agGCCGGUUG-----------CGCGUUGuguUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 7574 0.67 0.733508
Target:  5'- aCCGGCac-CGCGCcauGCugAGCgACAu -3'
miRNA:   3'- aGGCCGguuGCGCGu--UGugUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 48031 0.67 0.722987
Target:  5'- cUCGGCCAuguUGCGCcGCugGAUCAg- -3'
miRNA:   3'- aGGCCGGUu--GCGCGuUGugUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 43962 0.67 0.722987
Target:  5'- aUCGGCCAccgUGCGCAGCACcggGAgCAUg -3'
miRNA:   3'- aGGCCGGUu--GCGCGUUGUG---UUgGUGu -5'
19071 5' -54.9 NC_004684.1 + 31891 0.67 0.722987
Target:  5'- gCCGGUgcuccuCAACGCGCAGCgACGuugCGCAg -3'
miRNA:   3'- aGGCCG------GUUGCGCGUUG-UGUug-GUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.