Results 21 - 40 of 342 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
19071 | 5' | -54.9 | NC_004684.1 | + | 6629 | 0.75 | 0.289005 |
Target: 5'- cCUGGCCAgggccgugcucccugACGUGCAGCGCGgugucgacauGCCACGg -3' miRNA: 3'- aGGCCGGU---------------UGCGCGUUGUGU----------UGGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 17854 | 0.75 | 0.303701 |
Target: 5'- gUCGGCCAcCGCGCAcaccgccgggugcacGCugGGCCGCu -3' miRNA: 3'- aGGCCGGUuGCGCGU---------------UGugUUGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 62938 | 0.75 | 0.272114 |
Target: 5'- gCCGaCCAGCGCGCGGCGCGcGCCgACGa -3' miRNA: 3'- aGGCcGGUUGCGCGUUGUGU-UGG-UGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 21291 | 0.74 | 0.331586 |
Target: 5'- cCCGGCCGuaucUGCGCAACGCAGgCGa- -3' miRNA: 3'- aGGCCGGUu---GCGCGUUGUGUUgGUgu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 37356 | 0.74 | 0.323655 |
Target: 5'- aCCGGCgAGCGCGCGuucacGCuCAGCCAgGa -3' miRNA: 3'- aGGCCGgUUGCGCGU-----UGuGUUGGUgU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 51562 | 0.74 | 0.323655 |
Target: 5'- cUCUGcGCCAguGCGCGCuGCGCGGCgGCGa -3' miRNA: 3'- -AGGC-CGGU--UGCGCGuUGUGUUGgUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 25611 | 0.74 | 0.331586 |
Target: 5'- gCCGGgCAcauGCGCGCGACGCuGCC-CAa -3' miRNA: 3'- aGGCCgGU---UGCGCGUUGUGuUGGuGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 10496 | 0.74 | 0.331586 |
Target: 5'- cCCGGCCGACGC---ACugGGCCGCc -3' miRNA: 3'- aGGCCGGUUGCGcguUGugUUGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 40069 | 0.74 | 0.339658 |
Target: 5'- gUUGGUCAGCGUGCGGuCGCAgauACCGCAg -3' miRNA: 3'- aGGCCGGUUGCGCGUU-GUGU---UGGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 45643 | 0.74 | 0.339658 |
Target: 5'- --aGGCgCAGCGCGCGGC-CGACCAUc -3' miRNA: 3'- aggCCG-GUUGCGCGUUGuGUUGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 539 | 0.74 | 0.339658 |
Target: 5'- gCUGGCCAGCGCGguCGAgGCcGCCACc -3' miRNA: 3'- aGGCCGGUUGCGC--GUUgUGuUGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 61001 | 0.74 | 0.337221 |
Target: 5'- cUCGGCCAACuucgccaacacgcuGCGCAACGCGcagGCCAUc -3' miRNA: 3'- aGGCCGGUUG--------------CGCGUUGUGU---UGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 7317 | 0.74 | 0.347872 |
Target: 5'- cCCGGCCAugGC-CGACGCGugCuCGg -3' miRNA: 3'- aGGCCGGUugCGcGUUGUGUugGuGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 25376 | 0.73 | 0.373357 |
Target: 5'- cCCGGUCAGCGC-CuACGCcGCCGCGc -3' miRNA: 3'- aGGCCGGUUGCGcGuUGUGuUGGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 25668 | 0.73 | 0.382129 |
Target: 5'- aCCGGgCAGgGCGCGACcuACGGCgGCAa -3' miRNA: 3'- aGGCCgGUUgCGCGUUG--UGUUGgUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 63374 | 0.73 | 0.364722 |
Target: 5'- -gCGGCCGACGCGCcAGC-CGAUgGCGg -3' miRNA: 3'- agGCCGGUUGCGCG-UUGuGUUGgUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 59937 | 0.73 | 0.391037 |
Target: 5'- gUCCGGCCccacguGCGCGUugugcuggcGGCGCucguGCCGCAc -3' miRNA: 3'- -AGGCCGGu-----UGCGCG---------UUGUGu---UGGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 56299 | 0.73 | 0.391037 |
Target: 5'- cCCGGCCcuGGCGCGCcggGACGuggaGACCGCGc -3' miRNA: 3'- aGGCCGG--UUGCGCG---UUGUg---UUGGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 66903 | 0.73 | 0.382129 |
Target: 5'- -gCGGCCuuCgGCGCGGCcuugGCGGCCACAa -3' miRNA: 3'- agGCCGGuuG-CGCGUUG----UGUUGGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 61211 | 0.73 | 0.364722 |
Target: 5'- cCUGGCCGuuCGCGuCGGCGauCAGCCACAc -3' miRNA: 3'- aGGCCGGUu-GCGC-GUUGU--GUUGGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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