miRNA display CGI


Results 81 - 100 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 26397 0.71 0.50142
Target:  5'- aUCUGGCCAACGCcGCcaccGGCGCGcuggcagcgggguucGCCGCc -3'
miRNA:   3'- -AGGCCGGUUGCG-CG----UUGUGU---------------UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 29656 0.71 0.476952
Target:  5'- aUCUGGCCAACGaGCAGgCGCu-CCACc -3'
miRNA:   3'- -AGGCCGGUUGCgCGUU-GUGuuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 18676 0.71 0.487078
Target:  5'- aCCGGCaAGCGCugGCAGgGCcGCCGCAc -3'
miRNA:   3'- aGGCCGgUUGCG--CGUUgUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 18277 0.71 0.466933
Target:  5'- uUCCaGGCCGACGC-CGACgGCGACCugugGCAc -3'
miRNA:   3'- -AGG-CCGGUUGCGcGUUG-UGUUGG----UGU- -5'
19071 5' -54.9 NC_004684.1 + 3100 0.71 0.476952
Target:  5'- -aCGGCCAGgGCGCAcugcGCGCggUCAUc -3'
miRNA:   3'- agGCCGGUUgCGCGU----UGUGuuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 37693 0.71 0.466933
Target:  5'- uUCUGGCCcacgacguuGACGCGCGcACGCGcggucuggucgGCCGCGc -3'
miRNA:   3'- -AGGCCGG---------UUGCGCGU-UGUGU-----------UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 42476 0.71 0.466933
Target:  5'- gCCGcCCAGCGCGCugauCGCGGCgGCGg -3'
miRNA:   3'- aGGCcGGUUGCGCGuu--GUGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 26449 0.71 0.507624
Target:  5'- cCCGGUguACG-GCGGCACGccugGCCGCGa -3'
miRNA:   3'- aGGCCGguUGCgCGUUGUGU----UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 52900 0.71 0.497303
Target:  5'- aCCGGCgacCGGCGUGguACcgGCAACCACc -3'
miRNA:   3'- aGGCCG---GUUGCGCguUG--UGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 14905 0.71 0.497303
Target:  5'- aCCGGUcgCAACGCGCuggaggugGugGCGGCCAUg -3'
miRNA:   3'- aGGCCG--GUUGCGCG--------UugUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 4414 0.71 0.466933
Target:  5'- aCCGGCC-ACGUGCGcaccaccgaGCAC-GCCACc -3'
miRNA:   3'- aGGCCGGuUGCGCGU---------UGUGuUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 27906 0.71 0.507624
Target:  5'- cCCGGCCuGCGCgaguuccuggGCGACACcaucuACCGCc -3'
miRNA:   3'- aGGCCGGuUGCG----------CGUUGUGu----UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 22960 0.7 0.539101
Target:  5'- --aGGCCAgaaGCGCGcCAACGCcGCCAUc -3'
miRNA:   3'- aggCCGGU---UGCGC-GUUGUGuUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 1258 0.7 0.539101
Target:  5'- cCCGGCCcaGAUGCGCuGGCugGugGCCAUg -3'
miRNA:   3'- aGGCCGG--UUGCGCG-UUGugU--UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 13971 0.7 0.539101
Target:  5'- -aCGGCaguCGCGCGGCGCAggccagcccgGCCACc -3'
miRNA:   3'- agGCCGguuGCGCGUUGUGU----------UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 4436 0.7 0.549744
Target:  5'- gCgGGCCuGCugGCGCAGCugGagGCCGCAc -3'
miRNA:   3'- aGgCCGGuUG--CGCGUUGugU--UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 65326 0.7 0.528529
Target:  5'- -aCGGCCAGCGCcagGCAGgcCACGAUgGCGg -3'
miRNA:   3'- agGCCGGUUGCG---CGUU--GUGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 39626 0.7 0.528529
Target:  5'- cCUGGCgGggguCGCGCGGCACggUCACc -3'
miRNA:   3'- aGGCCGgUu---GCGCGUUGUGuuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 46056 0.7 0.528529
Target:  5'- -aCGGUCuugcCGCGCGGCugGACCAgGa -3'
miRNA:   3'- agGCCGGuu--GCGCGUUGugUUGGUgU- -5'
19071 5' -54.9 NC_004684.1 + 5700 0.7 0.539101
Target:  5'- gCCGGUggagCAGCGCGCccuCGC-GCCGCAg -3'
miRNA:   3'- aGGCCG----GUUGCGCGuu-GUGuUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.