miRNA display CGI


Results 41 - 60 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 25376 0.73 0.373357
Target:  5'- cCCGGUCAGCGC-CuACGCcGCCGCGc -3'
miRNA:   3'- aGGCCGGUUGCGcGuUGUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 66903 0.73 0.382129
Target:  5'- -gCGGCCuuCgGCGCGGCcuugGCGGCCACAa -3'
miRNA:   3'- agGCCGGuuG-CGCGUUG----UGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 4158 0.73 0.382129
Target:  5'- cUCgGGCCGACGCccgGCAACG-AGCCGCc -3'
miRNA:   3'- -AGgCCGGUUGCG---CGUUGUgUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 9833 0.73 0.382129
Target:  5'- gUCGGCCAACcgGCGCAGCucgGCggUCGCGc -3'
miRNA:   3'- aGGCCGGUUG--CGCGUUG---UGuuGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 25668 0.73 0.382129
Target:  5'- aCCGGgCAGgGCGCGACcuACGGCgGCAa -3'
miRNA:   3'- aGGCCgGUUgCGCGUUG--UGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 6467 0.73 0.391037
Target:  5'- aCUGGCCGagGCGUGCGACGCcguGGCCGa- -3'
miRNA:   3'- aGGCCGGU--UGCGCGUUGUG---UUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 28068 0.73 0.391037
Target:  5'- aCCGGCCuggGCGCgGCAACugGGgCGCu -3'
miRNA:   3'- aGGCCGGu--UGCG-CGUUGugUUgGUGu -5'
19071 5' -54.9 NC_004684.1 + 59937 0.73 0.391037
Target:  5'- gUCCGGCCccacguGCGCGUugugcuggcGGCGCucguGCCGCAc -3'
miRNA:   3'- -AGGCCGGu-----UGCGCG---------UUGUGu---UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 56299 0.73 0.391037
Target:  5'- cCCGGCCcuGGCGCGCcggGACGuggaGACCGCGc -3'
miRNA:   3'- aGGCCGG--UUGCGCG---UUGUg---UUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 9040 0.72 0.409254
Target:  5'- aCCGGCgcggCAACGC-CAGCAgGGCCACc -3'
miRNA:   3'- aGGCCG----GUUGCGcGUUGUgUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 54127 0.72 0.409254
Target:  5'- -gCGGCCAccaGCGCGCuggcgguCACGGCCugGc -3'
miRNA:   3'- agGCCGGU---UGCGCGuu-----GUGUUGGugU- -5'
19071 5' -54.9 NC_004684.1 + 65434 0.72 0.409254
Target:  5'- gCUGcGCUGGCGUGCGgcGCGCGGCCACc -3'
miRNA:   3'- aGGC-CGGUUGCGCGU--UGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 27307 0.72 0.427992
Target:  5'- aUCGGCCGcUGCGguAUcuGCGACCGCAc -3'
miRNA:   3'- aGGCCGGUuGCGCguUG--UGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 34343 0.72 0.436587
Target:  5'- aCCGGCCucGCaGCGUAagggagaACAUGACCGCAc -3'
miRNA:   3'- aGGCCGGu-UG-CGCGU-------UGUGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 39064 0.72 0.437548
Target:  5'- -gUGGCCAGCGU-CAACACGAUCAUg -3'
miRNA:   3'- agGCCGGUUGCGcGUUGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 15070 0.72 0.437548
Target:  5'- gCUGGCC--UGCGCAccGCGCAGCUGCGc -3'
miRNA:   3'- aGGCCGGuuGCGCGU--UGUGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 18406 0.72 0.437548
Target:  5'- cCCGGCCAGCaGgGCAccgACGCGcCCGCc -3'
miRNA:   3'- aGGCCGGUUG-CgCGU---UGUGUuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 59683 0.72 0.437548
Target:  5'- cUCaCGGCCAGCGCcaCGGCgACGGCCugGa -3'
miRNA:   3'- -AG-GCCGGUUGCGc-GUUG-UGUUGGugU- -5'
19071 5' -54.9 NC_004684.1 + 42502 0.72 0.447226
Target:  5'- aCCaGGCCAACGCGaucaaCGGCGCGcucACCGCc -3'
miRNA:   3'- aGG-CCGGUUGCGC-----GUUGUGU---UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 56161 0.72 0.447226
Target:  5'- cCUGGCCGACGacgGCGACgACGGCgGCGc -3'
miRNA:   3'- aGGCCGGUUGCg--CGUUG-UGUUGgUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.