miRNA display CGI


Results 61 - 80 of 342 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 6165 0.72 0.447226
Target:  5'- -gCGGCCAGCGUGCGGCgguaggcaccggGCAGgUACAu -3'
miRNA:   3'- agGCCGGUUGCGCGUUG------------UGUUgGUGU- -5'
19071 5' -54.9 NC_004684.1 + 21724 0.72 0.447227
Target:  5'- cCCGGUCAaaaaaccucuACGCGCAGaugguCGGCCGCGc -3'
miRNA:   3'- aGGCCGGU----------UGCGCGUUgu---GUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 48185 0.72 0.447227
Target:  5'- aCCGGCuCAGgcuauCGCGCGgGCACGcACCACGg -3'
miRNA:   3'- aGGCCG-GUU-----GCGCGU-UGUGU-UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 8718 0.72 0.447227
Target:  5'- -aCGGUCGACGgGgAACAUGGCCACc -3'
miRNA:   3'- agGCCGGUUGCgCgUUGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 43994 0.72 0.451131
Target:  5'- cCCGGCCAGCuGCGUuggccaggucaucCACGACCAUu -3'
miRNA:   3'- aGGCCGGUUG-CGCGuu-----------GUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 8872 0.71 0.457023
Target:  5'- gCCGccGCCAACG-GCAcGCugGACCGCAg -3'
miRNA:   3'- aGGC--CGGUUGCgCGU-UGugUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 2080 0.71 0.457023
Target:  5'- gCUGGCCGugGUGCAcaGCGaGGCCGCc -3'
miRNA:   3'- aGGCCGGUugCGCGU--UGUgUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 2883 0.71 0.457023
Target:  5'- aCCuGCUggUGCGCAACACGuucGCCgACAa -3'
miRNA:   3'- aGGcCGGuuGCGCGUUGUGU---UGG-UGU- -5'
19071 5' -54.9 NC_004684.1 + 24799 0.71 0.460973
Target:  5'- -aCGGCCAAggcggucggcaacauCGCGCAGgAC-ACCACAc -3'
miRNA:   3'- agGCCGGUU---------------GCGCGUUgUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 2707 0.71 0.465937
Target:  5'- cCUGGCCggUGCcggggGCAagugcgccacaccGCACGGCCACAc -3'
miRNA:   3'- aGGCCGGuuGCG-----CGU-------------UGUGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 13091 0.71 0.466933
Target:  5'- cCCGGUUcGCGCGguGCAC-GCCGCc -3'
miRNA:   3'- aGGCCGGuUGCGCguUGUGuUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 26332 0.71 0.466933
Target:  5'- gCCGauuGCCGACGCGguGCGCucgGCCAUu -3'
miRNA:   3'- aGGC---CGGUUGCGCguUGUGu--UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 42476 0.71 0.466933
Target:  5'- gCCGcCCAGCGCGCugauCGCGGCgGCGg -3'
miRNA:   3'- aGGCcGGUUGCGCGuu--GUGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 37693 0.71 0.466933
Target:  5'- uUCUGGCCcacgacguuGACGCGCGcACGCGcggucuggucgGCCGCGc -3'
miRNA:   3'- -AGGCCGG---------UUGCGCGU-UGUGU-----------UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 63156 0.71 0.466933
Target:  5'- -gCGGCUccuGCGCGCcGCGCAGgCGCAu -3'
miRNA:   3'- agGCCGGu--UGCGCGuUGUGUUgGUGU- -5'
19071 5' -54.9 NC_004684.1 + 18277 0.71 0.466933
Target:  5'- uUCCaGGCCGACGC-CGACgGCGACCugugGCAc -3'
miRNA:   3'- -AGG-CCGGUUGCGcGUUG-UGUUGG----UGU- -5'
19071 5' -54.9 NC_004684.1 + 3295 0.71 0.466933
Target:  5'- --aGGCCAugGCaCAGCGCGAgCGCGa -3'
miRNA:   3'- aggCCGGUugCGcGUUGUGUUgGUGU- -5'
19071 5' -54.9 NC_004684.1 + 4414 0.71 0.466933
Target:  5'- aCCGGCC-ACGUGCGcaccaccgaGCAC-GCCACc -3'
miRNA:   3'- aGGCCGGuUGCGCGU---------UGUGuUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 62995 0.71 0.476952
Target:  5'- gCCGGUggccgggaacgCGAUGCGCAGgAUGACCGCGc -3'
miRNA:   3'- aGGCCG-----------GUUGCGCGUUgUGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 10520 0.71 0.476952
Target:  5'- -aCGGUCAGCGCGCAcCGCucGCCGg- -3'
miRNA:   3'- agGCCGGUUGCGCGUuGUGu-UGGUgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.