miRNA display CGI


Results 81 - 100 of 342 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 29656 0.71 0.476952
Target:  5'- aUCUGGCCAACGaGCAGgCGCu-CCACc -3'
miRNA:   3'- -AGGCCGGUUGCgCGUU-GUGuuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 62995 0.71 0.476952
Target:  5'- gCCGGUggccgggaacgCGAUGCGCAGgAUGACCGCGc -3'
miRNA:   3'- aGGCCG-----------GUUGCGCGUUgUGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 18676 0.71 0.487078
Target:  5'- aCCGGCaAGCGCugGCAGgGCcGCCGCAc -3'
miRNA:   3'- aGGCCGgUUGCG--CGUUgUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 59548 0.71 0.494225
Target:  5'- aCC-GCCAGCGCGCGccguugucgcaccaGCGCAuguccaucaGCCGCAc -3'
miRNA:   3'- aGGcCGGUUGCGCGU--------------UGUGU---------UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 15683 0.71 0.497303
Target:  5'- -gUGGCCAGCG-GCGGCACcgacGCCACc -3'
miRNA:   3'- agGCCGGUUGCgCGUUGUGu---UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 14905 0.71 0.497303
Target:  5'- aCCGGUcgCAACGCGCuggaggugGugGCGGCCAUg -3'
miRNA:   3'- aGGCCG--GUUGCGCG--------UugUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 52900 0.71 0.497303
Target:  5'- aCCGGCgacCGGCGUGguACcgGCAACCACc -3'
miRNA:   3'- aGGCCG---GUUGCGCguUG--UGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 59599 0.71 0.497303
Target:  5'- cCCGGUCAcauccCGCGCAccaauGCuCGACCACGg -3'
miRNA:   3'- aGGCCGGUu----GCGCGU-----UGuGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 26397 0.71 0.50142
Target:  5'- aUCUGGCCAACGCcGCcaccGGCGCGcuggcagcgggguucGCCGCc -3'
miRNA:   3'- -AGGCCGGUUGCG-CG----UUGUGU---------------UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 27906 0.71 0.507624
Target:  5'- cCCGGCCuGCGCgaguuccuggGCGACACcaucuACCGCc -3'
miRNA:   3'- aGGCCGGuUGCG----------CGUUGUGu----UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 26449 0.71 0.507624
Target:  5'- cCCGGUguACG-GCGGCACGccugGCCGCGa -3'
miRNA:   3'- aGGCCGguUGCgCGUUGUGU----UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 11652 0.71 0.507624
Target:  5'- aUCGGCC-ACGC-CAGCACGGCgGCc -3'
miRNA:   3'- aGGCCGGuUGCGcGUUGUGUUGgUGu -5'
19071 5' -54.9 NC_004684.1 + 44432 0.7 0.514902
Target:  5'- gUCCGGCCcgGugGCGUAgucgaccagcuugaGCACGcugGCCACc -3'
miRNA:   3'- -AGGCCGG--UugCGCGU--------------UGUGU---UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 58968 0.7 0.518035
Target:  5'- cCCGGCgGGCGCGCGGguU--CCACAc -3'
miRNA:   3'- aGGCCGgUUGCGCGUUguGuuGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 1721 0.7 0.518035
Target:  5'- aCCGGCCAGUGcCGCGACcucACcACCACc -3'
miRNA:   3'- aGGCCGGUUGC-GCGUUG---UGuUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 62602 0.7 0.518035
Target:  5'- gCCGGUCAugGCGUcGCGCAcCC-CGg -3'
miRNA:   3'- aGGCCGGUugCGCGuUGUGUuGGuGU- -5'
19071 5' -54.9 NC_004684.1 + 31764 0.7 0.518035
Target:  5'- cUCGGCCAccACGCGCGGaaagUAguGCCGCGc -3'
miRNA:   3'- aGGCCGGU--UGCGCGUU----GUguUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 41941 0.7 0.527476
Target:  5'- -gCGGUCAACG-GCGGCACcaacggccuggagGACCGCAa -3'
miRNA:   3'- agGCCGGUUGCgCGUUGUG-------------UUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 39626 0.7 0.528529
Target:  5'- cCUGGCgGggguCGCGCGGCACggUCACc -3'
miRNA:   3'- aGGCCGgUu---GCGCGUUGUGuuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 19809 0.7 0.528529
Target:  5'- gCUGGCCAaggaguucgucaGCGCGUGugACGGCgGCGc -3'
miRNA:   3'- aGGCCGGU------------UGCGCGUugUGUUGgUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.