miRNA display CGI


Results 101 - 120 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 39626 0.7 0.528529
Target:  5'- cCUGGCgGggguCGCGCGGCACggUCACc -3'
miRNA:   3'- aGGCCGgUu---GCGCGUUGUGuuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 19809 0.7 0.528529
Target:  5'- gCUGGCCAaggaguucgucaGCGCGUGugACGGCgGCGc -3'
miRNA:   3'- aGGCCGGU------------UGCGCGUugUGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 61486 0.7 0.528529
Target:  5'- gCCGGUCGuGCGCGauCAGCGCcGCCGCc -3'
miRNA:   3'- aGGCCGGU-UGCGC--GUUGUGuUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 66944 0.7 0.538041
Target:  5'- -aCGGCCAcgauGCGCGCAGCGguguccuCGuCCACGu -3'
miRNA:   3'- agGCCGGU----UGCGCGUUGU-------GUuGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 15818 0.7 0.539101
Target:  5'- cCCGGUCGccgcCGCGCAGCGCGcacuGgCGCAg -3'
miRNA:   3'- aGGCCGGUu---GCGCGUUGUGU----UgGUGU- -5'
19071 5' -54.9 NC_004684.1 + 13971 0.7 0.539101
Target:  5'- -aCGGCaguCGCGCGGCGCAggccagcccgGCCACc -3'
miRNA:   3'- agGCCGguuGCGCGUUGUGU----------UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 1258 0.7 0.539101
Target:  5'- cCCGGCCcaGAUGCGCuGGCugGugGCCAUg -3'
miRNA:   3'- aGGCCGG--UUGCGCG-UUGugU--UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 7189 0.7 0.539101
Target:  5'- --aGGCCAACGCcgauCAGCACAuccugccagGCCGCGu -3'
miRNA:   3'- aggCCGGUUGCGc---GUUGUGU---------UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 5700 0.7 0.539101
Target:  5'- gCCGGUggagCAGCGCGCccuCGC-GCCGCAg -3'
miRNA:   3'- aGGCCG----GUUGCGCGuu-GUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 22960 0.7 0.539101
Target:  5'- --aGGCCAgaaGCGCGcCAACGCcGCCAUc -3'
miRNA:   3'- aggCCGGU---UGCGC-GUUGUGuUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 11061 0.7 0.549744
Target:  5'- cCCGGaCAugaacuCGCGCAGCGCGGucuCCACGu -3'
miRNA:   3'- aGGCCgGUu-----GCGCGUUGUGUU---GGUGU- -5'
19071 5' -54.9 NC_004684.1 + 24153 0.7 0.549744
Target:  5'- cUCCGGCCcGCGCGCuGGCGagaaGAUCAa- -3'
miRNA:   3'- -AGGCCGGuUGCGCG-UUGUg---UUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 14963 0.7 0.549744
Target:  5'- gCCGaGCCAgguccgcuuGCGUGCAACGCAgaACCuGCGc -3'
miRNA:   3'- aGGC-CGGU---------UGCGCGUUGUGU--UGG-UGU- -5'
19071 5' -54.9 NC_004684.1 + 4436 0.7 0.549744
Target:  5'- gCgGGCCuGCugGCGCAGCugGagGCCGCAc -3'
miRNA:   3'- aGgCCGGuUG--CGCGUUGugU--UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 18437 0.7 0.549744
Target:  5'- -gCGGCCGACGUggcucccgaGCAGgACGACgGCAc -3'
miRNA:   3'- agGCCGGUUGCG---------CGUUgUGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 46795 0.7 0.549744
Target:  5'- gUCCGGUCGugGCGguagucccCGugGCGugCGCAc -3'
miRNA:   3'- -AGGCCGGUugCGC--------GUugUGUugGUGU- -5'
19071 5' -54.9 NC_004684.1 + 630 0.7 0.560452
Target:  5'- cCUGGCCGACGaGCAcgGCGACCcCAa -3'
miRNA:   3'- aGGCCGGUUGCgCGUugUGUUGGuGU- -5'
19071 5' -54.9 NC_004684.1 + 21540 0.7 0.560452
Target:  5'- gCCGacGCCAucaacgaGCGCGGCAUGACCGCc -3'
miRNA:   3'- aGGC--CGGUug-----CGCGUUGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 39305 0.7 0.560452
Target:  5'- cCCGGUgCGgguCGCGCGGCGgccCGGCCACAc -3'
miRNA:   3'- aGGCCG-GUu--GCGCGUUGU---GUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 55808 0.7 0.560452
Target:  5'- gUCCGGUgAGCGCGUgcgAGCACGggguGCCGg- -3'
miRNA:   3'- -AGGCCGgUUGCGCG---UUGUGU----UGGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.