miRNA display CGI


Results 121 - 140 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 42781 0.69 0.571215
Target:  5'- cCUGGCCGcccAUGCGCGcCACGuCCGCu -3'
miRNA:   3'- aGGCCGGU---UGCGCGUuGUGUuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 22939 0.69 0.571215
Target:  5'- -gUGGCCAGCGUGCucAGCugguCGACUACGc -3'
miRNA:   3'- agGCCGGUUGCGCG--UUGu---GUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 20164 0.69 0.57878
Target:  5'- cCCGGCCcuugcggcguucGACGCGCAcgucggggugucugGCgACAACUGCGc -3'
miRNA:   3'- aGGCCGG------------UUGCGCGU--------------UG-UGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 60162 0.69 0.580945
Target:  5'- aCCGGgCAcaccuccACGCGCucccaGACGCGGCCugGc -3'
miRNA:   3'- aGGCCgGU-------UGCGCG-----UUGUGUUGGugU- -5'
19071 5' -54.9 NC_004684.1 + 44666 0.69 0.582029
Target:  5'- aCCGGUC-GCGCGU-GC-CAGCCACGg -3'
miRNA:   3'- aGGCCGGuUGCGCGuUGuGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 27372 0.69 0.582029
Target:  5'- cCCGGUCuGCGcCGCuAACGCAggcugguaagccACCACAc -3'
miRNA:   3'- aGGCCGGuUGC-GCG-UUGUGU------------UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 27198 0.69 0.582029
Target:  5'- cCUGGUCAGCGacagcgaGCAGCGCAugagcuucGCCGCc -3'
miRNA:   3'- aGGCCGGUUGCg------CGUUGUGU--------UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 26728 0.69 0.582029
Target:  5'- gCUGGCCGA-GCGCGACugGcgggGCCAg- -3'
miRNA:   3'- aGGCCGGUUgCGCGUUGugU----UGGUgu -5'
19071 5' -54.9 NC_004684.1 + 31209 0.69 0.582029
Target:  5'- gCUGagguGCCAGCGCGUcGCcaACGACCGCGa -3'
miRNA:   3'- aGGC----CGGUUGCGCGuUG--UGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 21008 0.69 0.586366
Target:  5'- cCCGGCCAGCGacaucgGCAucgugauggccgagcACgACGACCACc -3'
miRNA:   3'- aGGCCGGUUGCg-----CGU---------------UG-UGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 15753 0.69 0.592883
Target:  5'- -aCGGCCAGCagcuGCGCAGCgGCAccuAUCGCGg -3'
miRNA:   3'- agGCCGGUUG----CGCGUUG-UGU---UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 61102 0.69 0.592883
Target:  5'- aCCGGUCGACGCGgc-UACAguucGCCGCGc -3'
miRNA:   3'- aGGCCGGUUGCGCguuGUGU----UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 4188 0.69 0.592883
Target:  5'- cCCGGCgGGCGCGguGguucugaucacCGcCAGCCACGa -3'
miRNA:   3'- aGGCCGgUUGCGCguU-----------GU-GUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 8762 0.69 0.592883
Target:  5'- --aGGCCca-GCGCGGCAcCAGCCGCc -3'
miRNA:   3'- aggCCGGuugCGCGUUGU-GUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 7561 0.69 0.592883
Target:  5'- aCCGGCCccggguGGCGCugguGCGGCugGugCGCGg -3'
miRNA:   3'- aGGCCGG------UUGCG----CGUUGugUugGUGU- -5'
19071 5' -54.9 NC_004684.1 + 29758 0.69 0.60377
Target:  5'- -gCGGCCAugGC-CAGCGCAccgACgGCGu -3'
miRNA:   3'- agGCCGGUugCGcGUUGUGU---UGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 34238 0.69 0.60377
Target:  5'- gCCgGGCCAACGgGCGGCAacuGCCu-- -3'
miRNA:   3'- aGG-CCGGUUGCgCGUUGUgu-UGGugu -5'
19071 5' -54.9 NC_004684.1 + 61320 0.69 0.60377
Target:  5'- cCCGGCaucggcuacCAGCGCGgcgugguugguCAGCugGGCCGCGa -3'
miRNA:   3'- aGGCCG---------GUUGCGC-----------GUUGugUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 67024 0.69 0.60377
Target:  5'- cUCGGCCAGguCGCGCAugGCcAUCAgGg -3'
miRNA:   3'- aGGCCGGUU--GCGCGUugUGuUGGUgU- -5'
19071 5' -54.9 NC_004684.1 + 21332 0.69 0.60377
Target:  5'- cCUGGuCCAGcCGCGCGGCAagacCGugCGCAu -3'
miRNA:   3'- aGGCC-GGUU-GCGCGUUGU----GUugGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.