miRNA display CGI


Results 81 - 100 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 7730 0.67 0.743928
Target:  5'- --gGGUCAAUGCGCGACugG-CgCGCAu -3'
miRNA:   3'- aggCCGGUUGCGCGUUGugUuG-GUGU- -5'
19071 5' -54.9 NC_004684.1 + 21086 0.67 0.742891
Target:  5'- gCUGGCgCAcgccaaGCGcCGCAACGCGcucggccGCCGCGa -3'
miRNA:   3'- aGGCCG-GU------UGC-GCGUUGUGU-------UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 9890 0.67 0.742891
Target:  5'- aUCCGGCgCAggcaccuGCGUGCGGCGCuuguCgACGg -3'
miRNA:   3'- -AGGCCG-GU-------UGCGCGUUGUGuu--GgUGU- -5'
19071 5' -54.9 NC_004684.1 + 6449 0.67 0.740813
Target:  5'- cUUGGCCGAgGCGCAggggaugaugaccaGCugGGCgGCGg -3'
miRNA:   3'- aGGCCGGUUgCGCGU--------------UGugUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 46926 0.67 0.737688
Target:  5'- aCCGGCCAACGgcggugugggugaccCguucgggaugauGCAACGCAGCgGCu -3'
miRNA:   3'- aGGCCGGUUGC---------------G------------CGUUGUGUUGgUGu -5'
19071 5' -54.9 NC_004684.1 + 30981 0.67 0.734554
Target:  5'- gUCGGCaccguugagacgcugAugGCGCAGCugGGCCugAc -3'
miRNA:   3'- aGGCCGg--------------UugCGCGUUGugUUGGugU- -5'
19071 5' -54.9 NC_004684.1 + 10730 0.67 0.733508
Target:  5'- gCCaGGCCGACGagaucgaGCGGCGCAAgCgaGCAg -3'
miRNA:   3'- aGG-CCGGUUGCg------CGUUGUGUUgG--UGU- -5'
19071 5' -54.9 NC_004684.1 + 17074 0.67 0.733508
Target:  5'- cCUGGCCGG-GCGCAccgACugGGCaCGCGu -3'
miRNA:   3'- aGGCCGGUUgCGCGU---UGugUUG-GUGU- -5'
19071 5' -54.9 NC_004684.1 + 11373 0.67 0.733508
Target:  5'- -gUGGCCAGCagcguggugguGCGCGACuu-GCCGCGc -3'
miRNA:   3'- agGCCGGUUG-----------CGCGUUGuguUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 19315 0.67 0.733508
Target:  5'- cCCGGCCGACGCcGgAACcgguggucgaAACCGCc -3'
miRNA:   3'- aGGCCGGUUGCG-CgUUGug--------UUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 58830 0.67 0.733508
Target:  5'- --aGGCuCAucuCGUGCGGCACGaacACCACGc -3'
miRNA:   3'- aggCCG-GUu--GCGCGUUGUGU---UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 52236 0.67 0.733508
Target:  5'- aUCaGGCCGugGUGC--CACAGCgGCGg -3'
miRNA:   3'- -AGgCCGGUugCGCGuuGUGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 65629 0.67 0.733508
Target:  5'- gUCCaGCCAcGCGCGCAGCuccgguccCGACCuACc -3'
miRNA:   3'- -AGGcCGGU-UGCGCGUUGu-------GUUGG-UGu -5'
19071 5' -54.9 NC_004684.1 + 39662 0.67 0.733508
Target:  5'- aCCGGCCucCGCGUGccucgugcucGCGCucgGCCGCc -3'
miRNA:   3'- aGGCCGGuuGCGCGU----------UGUGu--UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 7511 0.67 0.733508
Target:  5'- gCUGGCCGccGCGCGCGugACccGACUg-- -3'
miRNA:   3'- aGGCCGGU--UGCGCGUugUG--UUGGugu -5'
19071 5' -54.9 NC_004684.1 + 10399 0.67 0.733508
Target:  5'- gCC-GCCAGCGUGCAG---AACCACGc -3'
miRNA:   3'- aGGcCGGUUGCGCGUUgugUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 17654 0.67 0.733508
Target:  5'- cUCCGuGCCgAGCGUGCcGCugAguuugaacGCCGCGc -3'
miRNA:   3'- -AGGC-CGG-UUGCGCGuUGugU--------UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 7574 0.67 0.733508
Target:  5'- aCCGGCac-CGCGCcauGCugAGCgACAu -3'
miRNA:   3'- aGGCCGguuGCGCGu--UGugUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 57964 0.67 0.727207
Target:  5'- -gCGGCUggUGCGCAcgcugcuggccgaggACAUGACCAa- -3'
miRNA:   3'- agGCCGGuuGCGCGU---------------UGUGUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 40935 0.67 0.722987
Target:  5'- gUCgCGGCCAgGCGUGCcgccguACACcgGGCCACc -3'
miRNA:   3'- -AG-GCCGGU-UGCGCGu-----UGUG--UUGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.