miRNA display CGI


Results 101 - 120 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 22240 0.67 0.722987
Target:  5'- cCCGcGCgauCAACGCGCAgGCGCGAgCAUg -3'
miRNA:   3'- aGGC-CG---GUUGCGCGU-UGUGUUgGUGu -5'
19071 5' -54.9 NC_004684.1 + 15403 0.67 0.722987
Target:  5'- aCCGGCagGGCGCGauggcCGACACcguGGCCACc -3'
miRNA:   3'- aGGCCGg-UUGCGC-----GUUGUG---UUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 4910 0.67 0.722987
Target:  5'- aCCGGCCu-CG-GCGGCACcAUCACc -3'
miRNA:   3'- aGGCCGGuuGCgCGUUGUGuUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 5597 0.67 0.722987
Target:  5'- --aGGCCuuCGC-CAcCGCGACCACGu -3'
miRNA:   3'- aggCCGGuuGCGcGUuGUGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 10014 0.67 0.722987
Target:  5'- gCCGGaCCugccGCGCGCcgaccgggAGCGCAucaucGCCACGc -3'
miRNA:   3'- aGGCC-GGu---UGCGCG--------UUGUGU-----UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 11897 0.67 0.722987
Target:  5'- aCCGGgauUCAACGUGCGcgGCACcACCgACAg -3'
miRNA:   3'- aGGCC---GGUUGCGCGU--UGUGuUGG-UGU- -5'
19071 5' -54.9 NC_004684.1 + 31891 0.67 0.722987
Target:  5'- gCCGGUgcuccuCAACGCGCAGCgACGuugCGCAg -3'
miRNA:   3'- aGGCCG------GUUGCGCGUUG-UGUug-GUGU- -5'
19071 5' -54.9 NC_004684.1 + 47637 0.67 0.722987
Target:  5'- aCCGGCaggcCGCGCAgguacuGCACGcuccagguGCCGCGc -3'
miRNA:   3'- aGGCCGguu-GCGCGU------UGUGU--------UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 839 0.67 0.722987
Target:  5'- uUCCGGUgaGGCGCaCAACGCcuACCGCc -3'
miRNA:   3'- -AGGCCGg-UUGCGcGUUGUGu-UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 40935 0.67 0.722987
Target:  5'- gUCgCGGCCAgGCGUGCcgccguACACcgGGCCACc -3'
miRNA:   3'- -AG-GCCGGU-UGCGCGu-----UGUG--UUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 48031 0.67 0.722987
Target:  5'- cUCGGCCAuguUGCGCcGCugGAUCAg- -3'
miRNA:   3'- aGGCCGGUu--GCGCGuUGugUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 43962 0.67 0.722987
Target:  5'- aUCGGCCAccgUGCGCAGCACcggGAgCAUg -3'
miRNA:   3'- aGGCCGGUu--GCGCGUUGUG---UUgGUGu -5'
19071 5' -54.9 NC_004684.1 + 64241 0.67 0.722987
Target:  5'- cUCGGCCAG-GCGCuggguguuGGCGCAcACCACc -3'
miRNA:   3'- aGGCCGGUUgCGCG--------UUGUGU-UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 64830 0.67 0.713442
Target:  5'- aCCGGCCucggcgaaggccuccGCGCGCuccacGCAgGugCGCAg -3'
miRNA:   3'- aGGCCGGu--------------UGCGCGu----UGUgUugGUGU- -5'
19071 5' -54.9 NC_004684.1 + 38543 0.67 0.712377
Target:  5'- aCCGGgaGACGC-CAGCGCucgucguACCACAu -3'
miRNA:   3'- aGGCCggUUGCGcGUUGUGu------UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 40435 0.67 0.712377
Target:  5'- aCCGGCCuuggucaGCGguGCccagGCGGCCGCc -3'
miRNA:   3'- aGGCCGGuug----CGCguUG----UGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 33837 0.67 0.712377
Target:  5'- cCCGGCggCGGCG-GCAACGgGGCCAa- -3'
miRNA:   3'- aGGCCG--GUUGCgCGUUGUgUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 23574 0.67 0.712377
Target:  5'- gCCuGCCGGgcCGCGCgAACACcGCCGCc -3'
miRNA:   3'- aGGcCGGUU--GCGCG-UUGUGuUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 36789 0.67 0.712377
Target:  5'- gCUGGUCGGCG-GCGGCucgguCAGCUACGa -3'
miRNA:   3'- aGGCCGGUUGCgCGUUGu----GUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 18522 0.67 0.712377
Target:  5'- cCCGGUCAucgccccguuCGCGCAcugGCGCGacauGCCGCc -3'
miRNA:   3'- aGGCCGGUu---------GCGCGU---UGUGU----UGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.