miRNA display CGI


Results 41 - 60 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 6449 0.67 0.740813
Target:  5'- cUUGGCCGAgGCGCAggggaugaugaccaGCugGGCgGCGg -3'
miRNA:   3'- aGGCCGGUUgCGCGU--------------UGugUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 6467 0.73 0.391037
Target:  5'- aCUGGCCGagGCGUGCGACGCcguGGCCGa- -3'
miRNA:   3'- aGGCCGGU--UGCGCGUUGUG---UUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 6629 0.75 0.289005
Target:  5'- cCUGGCCAgggccgugcucccugACGUGCAGCGCGgugucgacauGCCACGg -3'
miRNA:   3'- aGGCCGGU---------------UGCGCGUUGUGU----------UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 7052 0.68 0.666005
Target:  5'- gCUGGCCgAACGCGCGgugaucgcgcucgaACGCAuuGCCGa- -3'
miRNA:   3'- aGGCCGG-UUGCGCGU--------------UGUGU--UGGUgu -5'
19071 5' -54.9 NC_004684.1 + 7189 0.7 0.539101
Target:  5'- --aGGCCAACGCcgauCAGCACAuccugccagGCCGCGu -3'
miRNA:   3'- aggCCGGUUGCGc---GUUGUGU---------UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 7317 0.74 0.347872
Target:  5'- cCCGGCCAugGC-CGACGCGugCuCGg -3'
miRNA:   3'- aGGCCGGUugCGcGUUGUGUugGuGU- -5'
19071 5' -54.9 NC_004684.1 + 7328 0.66 0.754237
Target:  5'- aCgGGCCGcCGgGCcGCGC-GCCACGa -3'
miRNA:   3'- aGgCCGGUuGCgCGuUGUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 7435 0.66 0.774475
Target:  5'- -gCGGCacgAGCGcCGcCAGCACAACgCGCAc -3'
miRNA:   3'- agGCCGg--UUGC-GC-GUUGUGUUG-GUGU- -5'
19071 5' -54.9 NC_004684.1 + 7511 0.67 0.733508
Target:  5'- gCUGGCCGccGCGCGCGugACccGACUg-- -3'
miRNA:   3'- aGGCCGGU--UGCGCGUugUG--UUGGugu -5'
19071 5' -54.9 NC_004684.1 + 7561 0.69 0.592883
Target:  5'- aCCGGCCccggguGGCGCugguGCGGCugGugCGCGg -3'
miRNA:   3'- aGGCCGG------UUGCG----CGUUGugUugGUGU- -5'
19071 5' -54.9 NC_004684.1 + 7574 0.67 0.733508
Target:  5'- aCCGGCac-CGCGCcauGCugAGCgACAu -3'
miRNA:   3'- aGGCCGguuGCGCGu--UGugUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 7730 0.67 0.743928
Target:  5'- --gGGUCAAUGCGCGACugG-CgCGCAu -3'
miRNA:   3'- aggCCGGUUGCGCGUUGugUuG-GUGU- -5'
19071 5' -54.9 NC_004684.1 + 8263 0.67 0.701689
Target:  5'- gUCCcGCCAcguGCGCcgcgaccuGCGGCGCuACCACGg -3'
miRNA:   3'- -AGGcCGGU---UGCG--------CGUUGUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 8614 0.68 0.647466
Target:  5'- cCUGGCCccacacugUGCGCAGUGCAGCCACc -3'
miRNA:   3'- aGGCCGGuu------GCGCGUUGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 8718 0.72 0.447227
Target:  5'- -aCGGUCGACGgGgAACAUGGCCACc -3'
miRNA:   3'- agGCCGGUUGCgCgUUGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 8762 0.69 0.592883
Target:  5'- --aGGCCca-GCGCGGCAcCAGCCGCc -3'
miRNA:   3'- aggCCGGuugCGCGUUGU-GUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 8872 0.71 0.457023
Target:  5'- gCCGccGCCAACG-GCAcGCugGACCGCAg -3'
miRNA:   3'- aGGC--CGGUUGCgCGU-UGugUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 9040 0.72 0.409254
Target:  5'- aCCGGCgcggCAACGC-CAGCAgGGCCACc -3'
miRNA:   3'- aGGCCG----GUUGCGcGUUGUgUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 9293 0.68 0.643096
Target:  5'- cCCGGCCAugcucgGCGCGCucccggucgagcuGCACgGugCGCAc -3'
miRNA:   3'- aGGCCGGU------UGCGCGu------------UGUG-UugGUGU- -5'
19071 5' -54.9 NC_004684.1 + 9393 0.67 0.711312
Target:  5'- gCCGGuaCCGACGacaGCGAUcaggccagccuggACAGCCGCGa -3'
miRNA:   3'- aGGCC--GGUUGCg--CGUUG-------------UGUUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.