miRNA display CGI


Results 61 - 80 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 9423 0.76 0.265313
Target:  5'- cUCGGCCAgcaGCGUGCGcAC-CAGCCGCAg -3'
miRNA:   3'- aGGCCGGU---UGCGCGU-UGuGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 9462 0.66 0.794132
Target:  5'- uUCCGGgCGcuggagcugGCGgGCaAGCGCAGCCGu- -3'
miRNA:   3'- -AGGCCgGU---------UGCgCG-UUGUGUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 9499 0.66 0.771474
Target:  5'- cCCGGUCAcucccguacgagcuGCGC-CAGCucucCGACCGCGa -3'
miRNA:   3'- aGGCCGGU--------------UGCGcGUUGu---GUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 9833 0.73 0.382129
Target:  5'- gUCGGCCAACcgGCGCAGCucgGCggUCGCGc -3'
miRNA:   3'- aGGCCGGUUG--CGCGUUG---UGuuGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 9890 0.67 0.742891
Target:  5'- aUCCGGCgCAggcaccuGCGUGCGGCGCuuguCgACGg -3'
miRNA:   3'- -AGGCCG-GU-------UGCGCGUUGUGuu--GgUGU- -5'
19071 5' -54.9 NC_004684.1 + 10014 0.67 0.722987
Target:  5'- gCCGGaCCugccGCGCGCcgaccgggAGCGCAucaucGCCACGc -3'
miRNA:   3'- aGGCC-GGu---UGCGCG--------UUGUGU-----UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 10100 0.68 0.669269
Target:  5'- gCUGGCCGGgGUGCGGCucGCcgUCACAg -3'
miRNA:   3'- aGGCCGGUUgCGCGUUG--UGuuGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 10399 0.67 0.733508
Target:  5'- gCC-GCCAGCGUGCAG---AACCACGc -3'
miRNA:   3'- aGGcCGGUUGCGCGUUgugUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 10496 0.74 0.331586
Target:  5'- cCCGGCCGACGC---ACugGGCCGCc -3'
miRNA:   3'- aGGCCGGUUGCGcguUGugUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 10520 0.71 0.476952
Target:  5'- -aCGGUCAGCGCGCAcCGCucGCCGg- -3'
miRNA:   3'- agGCCGGUUGCGCGUuGUGu-UGGUgu -5'
19071 5' -54.9 NC_004684.1 + 10586 0.77 0.233363
Target:  5'- aUCCGGCUgguucGGCGCGCGagguGCGCAACUGCc -3'
miRNA:   3'- -AGGCCGG-----UUGCGCGU----UGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 10665 0.66 0.754237
Target:  5'- cCCGuGCUGGCGCGgcauCAGCACcGCCAg- -3'
miRNA:   3'- aGGC-CGGUUGCGC----GUUGUGuUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 10730 0.67 0.733508
Target:  5'- gCCaGGCCGACGagaucgaGCGGCGCAAgCgaGCAg -3'
miRNA:   3'- aGG-CCGGUUGCg------CGUUGUGUUgG--UGU- -5'
19071 5' -54.9 NC_004684.1 + 11061 0.7 0.549744
Target:  5'- cCCGGaCAugaacuCGCGCAGCGCGGucuCCACGu -3'
miRNA:   3'- aGGCCgGUu-----GCGCGUUGUGUU---GGUGU- -5'
19071 5' -54.9 NC_004684.1 + 11373 0.67 0.733508
Target:  5'- -gUGGCCAGCagcguggugguGCGCGACuu-GCCGCGc -3'
miRNA:   3'- agGCCGGUUG-----------CGCGUUGuguUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 11451 0.79 0.152263
Target:  5'- aCCgGGCCGACGCGCAcCACggUCACc -3'
miRNA:   3'- aGG-CCGGUUGCGCGUuGUGuuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 11528 0.66 0.754237
Target:  5'- cCCGGCCAccuuggcgucgACGuCGCAcugcACGCAGuacCCGCu -3'
miRNA:   3'- aGGCCGGU-----------UGC-GCGU----UGUGUU---GGUGu -5'
19071 5' -54.9 NC_004684.1 + 11652 0.71 0.507624
Target:  5'- aUCGGCC-ACGC-CAGCACGGCgGCc -3'
miRNA:   3'- aGGCCGGuUGCGcGUUGUGUUGgUGu -5'
19071 5' -54.9 NC_004684.1 + 11832 0.69 0.614681
Target:  5'- cCCGGCCAcCGgGCcACgGCGGCCAg- -3'
miRNA:   3'- aGGCCGGUuGCgCGuUG-UGUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 11897 0.67 0.722987
Target:  5'- aCCGGgauUCAACGUGCGcgGCACcACCgACAg -3'
miRNA:   3'- aGGCC---GGUUGCGCGU--UGUGuUGG-UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.