miRNA display CGI


Results 81 - 100 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 11928 0.68 0.658379
Target:  5'- cUCGGCCAggccuucaccGCGCuugGCGACAUAgACCACc -3'
miRNA:   3'- aGGCCGGU----------UGCG---CGUUGUGU-UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 11942 0.69 0.629979
Target:  5'- gCUGGCCAugGuCGCcagccuggcaccugcGGCGCcACCGCGa -3'
miRNA:   3'- aGGCCGGUugC-GCG---------------UUGUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 12091 0.66 0.784381
Target:  5'- gCUGGCCcGCGCGgCGgccaucACGCAACCc-- -3'
miRNA:   3'- aGGCCGGuUGCGC-GU------UGUGUUGGugu -5'
19071 5' -54.9 NC_004684.1 + 12239 0.68 0.680125
Target:  5'- uUCCGG-CAGCG-GCucCACcGCCACAa -3'
miRNA:   3'- -AGGCCgGUUGCgCGuuGUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 13091 0.71 0.466933
Target:  5'- cCCGGUUcGCGCGguGCAC-GCCGCc -3'
miRNA:   3'- aGGCCGGuUGCGCguUGUGuUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 13118 0.8 0.144144
Target:  5'- aCCGGCCAGCGCGgCAGCuucuCCACGc -3'
miRNA:   3'- aGGCCGGUUGCGC-GUUGuguuGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 13265 0.66 0.751157
Target:  5'- aCC-GCCAGCGCGCugguggccgccgguGGCugGugCGCGc -3'
miRNA:   3'- aGGcCGGUUGCGCG--------------UUGugUugGUGU- -5'
19071 5' -54.9 NC_004684.1 + 13971 0.7 0.539101
Target:  5'- -aCGGCaguCGCGCGGCGCAggccagcccgGCCACc -3'
miRNA:   3'- agGCCGguuGCGCGUUGUGU----------UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 14204 0.66 0.774475
Target:  5'- cCUGGCCAGCgGCGCggU-CGGCCu-- -3'
miRNA:   3'- aGGCCGGUUG-CGCGuuGuGUUGGugu -5'
19071 5' -54.9 NC_004684.1 + 14347 0.67 0.743928
Target:  5'- aUCgCGuaCAACGcCGaCAACGCGACCAUc -3'
miRNA:   3'- -AG-GCcgGUUGC-GC-GUUGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 14905 0.71 0.497303
Target:  5'- aCCGGUcgCAACGCGCuggaggugGugGCGGCCAUg -3'
miRNA:   3'- aGGCCG--GUUGCGCG--------UugUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 14963 0.7 0.549744
Target:  5'- gCCGaGCCAgguccgcuuGCGUGCAACGCAgaACCuGCGc -3'
miRNA:   3'- aGGC-CGGU---------UGCGCGUUGUGU--UGG-UGU- -5'
19071 5' -54.9 NC_004684.1 + 15070 0.72 0.437548
Target:  5'- gCUGGCC--UGCGCAccGCGCAGCUGCGc -3'
miRNA:   3'- aGGCCGGuuGCGCGU--UGUGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 15144 0.78 0.179159
Target:  5'- aUCCacGCCAGCGCGCAGCugGccGCCGCc -3'
miRNA:   3'- -AGGc-CGGUUGCGCGUUGugU--UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 15304 0.67 0.701689
Target:  5'- gCUGGCgCGACGCG-GugGCAACCcGCGa -3'
miRNA:   3'- aGGCCG-GUUGCGCgUugUGUUGG-UGU- -5'
19071 5' -54.9 NC_004684.1 + 15403 0.67 0.722987
Target:  5'- aCCGGCagGGCGCGauggcCGACACcguGGCCACc -3'
miRNA:   3'- aGGCCGg-UUGCGC-----GUUGUG---UUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 15573 0.66 0.774475
Target:  5'- cUCCaGCgCAGCGCGC---GCGGCCugGc -3'
miRNA:   3'- -AGGcCG-GUUGCGCGuugUGUUGGugU- -5'
19071 5' -54.9 NC_004684.1 + 15683 0.71 0.497303
Target:  5'- -gUGGCCAGCG-GCGGCACcgacGCCACc -3'
miRNA:   3'- agGCCGGUUGCgCGUUGUGu---UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 15753 0.69 0.592883
Target:  5'- -aCGGCCAGCagcuGCGCAGCgGCAccuAUCGCGg -3'
miRNA:   3'- agGCCGGUUG----CGCGUUG-UGU---UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 15794 0.73 0.364722
Target:  5'- aCCGG-CAACGUGC-ACACcACCACGc -3'
miRNA:   3'- aGGCCgGUUGCGCGuUGUGuUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.