miRNA display CGI


Results 101 - 120 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 15818 0.7 0.539101
Target:  5'- cCCGGUCGccgcCGCGCAGCGCGcacuGgCGCAg -3'
miRNA:   3'- aGGCCGGUu---GCGCGUUGUGU----UgGUGU- -5'
19071 5' -54.9 NC_004684.1 + 15826 0.77 0.221517
Target:  5'- cCCGGUgG-CGCGCGGCAUcGCCACAc -3'
miRNA:   3'- aGGCCGgUuGCGCGUUGUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 16203 0.76 0.258651
Target:  5'- -aCGGCCAggGCGCGCGguccauggcccgGCGCAucgGCCACAc -3'
miRNA:   3'- agGCCGGU--UGCGCGU------------UGUGU---UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 16426 0.69 0.625606
Target:  5'- gUCGGCCuacGACGUGCuGGCGCAcACCAUc -3'
miRNA:   3'- aGGCCGG---UUGCGCG-UUGUGU-UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 16480 0.79 0.1744
Target:  5'- gUCCGGCC-ACGUGCAGCuggcCAugCACGa -3'
miRNA:   3'- -AGGCCGGuUGCGCGUUGu---GUugGUGU- -5'
19071 5' -54.9 NC_004684.1 + 17074 0.67 0.733508
Target:  5'- cCUGGCCGG-GCGCAccgACugGGCaCGCGu -3'
miRNA:   3'- aGGCCGGUUgCGCGU---UGugUUG-GUGU- -5'
19071 5' -54.9 NC_004684.1 + 17654 0.67 0.733508
Target:  5'- cUCCGuGCCgAGCGUGCcGCugAguuugaacGCCGCGc -3'
miRNA:   3'- -AGGC-CGG-UUGCGCGuUGugU--------UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 17785 0.73 0.364722
Target:  5'- aCCGGCCAGC-CGCAACGacGCCuGCGg -3'
miRNA:   3'- aGGCCGGUUGcGCGUUGUguUGG-UGU- -5'
19071 5' -54.9 NC_004684.1 + 17854 0.75 0.303701
Target:  5'- gUCGGCCAcCGCGCAcaccgccgggugcacGCugGGCCGCu -3'
miRNA:   3'- aGGCCGGUuGCGCGU---------------UGugUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 18277 0.71 0.466933
Target:  5'- uUCCaGGCCGACGC-CGACgGCGACCugugGCAc -3'
miRNA:   3'- -AGG-CCGGUUGCGcGUUG-UGUUGG----UGU- -5'
19071 5' -54.9 NC_004684.1 + 18406 0.72 0.437548
Target:  5'- cCCGGCCAGCaGgGCAccgACGCGcCCGCc -3'
miRNA:   3'- aGGCCGGUUG-CgCGU---UGUGUuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 18437 0.7 0.549744
Target:  5'- -gCGGCCGACGUggcucccgaGCAGgACGACgGCAc -3'
miRNA:   3'- agGCCGGUUGCG---------CGUUgUGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 18522 0.67 0.712377
Target:  5'- cCCGGUCAucgccccguuCGCGCAcugGCGCGacauGCCGCc -3'
miRNA:   3'- aGGCCGGUu---------GCGCGU---UGUGU----UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 18676 0.71 0.487078
Target:  5'- aCCGGCaAGCGCugGCAGgGCcGCCGCAc -3'
miRNA:   3'- aGGCCGgUUGCG--CGUUgUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 18744 0.68 0.658379
Target:  5'- cUCCGGCgCGguGCaGCGCAuCugGGCCugGg -3'
miRNA:   3'- -AGGCCG-GU--UG-CGCGUuGugUUGGugU- -5'
19071 5' -54.9 NC_004684.1 + 19315 0.67 0.733508
Target:  5'- cCCGGCCGACGCcGgAACcgguggucgaAACCGCc -3'
miRNA:   3'- aGGCCGGUUGCG-CgUUGug--------UUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 19469 0.66 0.771474
Target:  5'- -gUGGCC--CGCGCGACAugcgccccuggagcCAGCCGCu -3'
miRNA:   3'- agGCCGGuuGCGCGUUGU--------------GUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 19646 1.09 0.00138
Target:  5'- gUCCGGCCAACGCGCAACACAACCACAc -3'
miRNA:   3'- -AGGCCGGUUGCGCGUUGUGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 19744 0.69 0.625606
Target:  5'- -gCGGCCAACGcCGCAcugGC-CGuCCACGa -3'
miRNA:   3'- agGCCGGUUGC-GCGU---UGuGUuGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 19809 0.7 0.528529
Target:  5'- gCUGGCCAaggaguucgucaGCGCGUGugACGGCgGCGc -3'
miRNA:   3'- aGGCCGGU------------UGCGCGUugUGUUGgUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.