miRNA display CGI


Results 121 - 140 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 20164 0.69 0.57878
Target:  5'- cCCGGCCcuugcggcguucGACGCGCAcgucggggugucugGCgACAACUGCGc -3'
miRNA:   3'- aGGCCGG------------UUGCGCGU--------------UG-UGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 20258 0.66 0.784381
Target:  5'- uUCCGGcCCGGCGCGUucC-CGGCCc-- -3'
miRNA:   3'- -AGGCC-GGUUGCGCGuuGuGUUGGugu -5'
19071 5' -54.9 NC_004684.1 + 20626 0.67 0.701689
Target:  5'- aCCGGCgAGCGC-CAGCGCGucgagcugACCcCAg -3'
miRNA:   3'- aGGCCGgUUGCGcGUUGUGU--------UGGuGU- -5'
19071 5' -54.9 NC_004684.1 + 20790 0.68 0.647466
Target:  5'- cCCGaaGCCAccgGCaCGCAACGcCAGCCGCGa -3'
miRNA:   3'- aGGC--CGGU---UGcGCGUUGU-GUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 20934 0.68 0.658379
Target:  5'- gUCCaGGUCAGCGUGCGcuACGaaguuuCGACUACAa -3'
miRNA:   3'- -AGG-CCGGUUGCGCGU--UGU------GUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 21008 0.69 0.586366
Target:  5'- cCCGGCCAGCGacaucgGCAucgugauggccgagcACgACGACCACc -3'
miRNA:   3'- aGGCCGGUUGCg-----CGU---------------UG-UGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 21086 0.67 0.742891
Target:  5'- gCUGGCgCAcgccaaGCGcCGCAACGCGcucggccGCCGCGa -3'
miRNA:   3'- aGGCCG-GU------UGC-GCGUUGUGU-------UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 21136 0.69 0.625606
Target:  5'- gUCCGGCgGugucacCGCGC-ACGCGaaauacGCCGCAg -3'
miRNA:   3'- -AGGCCGgUu-----GCGCGuUGUGU------UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 21203 0.68 0.658379
Target:  5'- aUCCgGGCCAagcACGCGCAGgCGCu-UCACu -3'
miRNA:   3'- -AGG-CCGGU---UGCGCGUU-GUGuuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 21291 0.74 0.331586
Target:  5'- cCCGGCCGuaucUGCGCAACGCAGgCGa- -3'
miRNA:   3'- aGGCCGGUu---GCGCGUUGUGUUgGUgu -5'
19071 5' -54.9 NC_004684.1 + 21332 0.69 0.60377
Target:  5'- cCUGGuCCAGcCGCGCGGCAagacCGugCGCAu -3'
miRNA:   3'- aGGCC-GGUU-GCGCGUUGU----GUugGUGU- -5'
19071 5' -54.9 NC_004684.1 + 21540 0.7 0.560452
Target:  5'- gCCGacGCCAucaacgaGCGCGGCAUGACCGCc -3'
miRNA:   3'- aGGC--CGGUug-----CGCGUUGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 21724 0.72 0.447227
Target:  5'- cCCGGUCAaaaaaccucuACGCGCAGaugguCGGCCGCGc -3'
miRNA:   3'- aGGCCGGU----------UGCGCGUUgu---GUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 21777 0.69 0.625606
Target:  5'- cCCGGCaagacCGACGCGCugguGCugGACCu-- -3'
miRNA:   3'- aGGCCG-----GUUGCGCGu---UGugUUGGugu -5'
19071 5' -54.9 NC_004684.1 + 22070 0.67 0.743928
Target:  5'- gUCUGGCUAccgggacaccgcACGCGCcGC-CAACgACAg -3'
miRNA:   3'- -AGGCCGGU------------UGCGCGuUGuGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 22240 0.67 0.722987
Target:  5'- cCCGcGCgauCAACGCGCAgGCGCGAgCAUg -3'
miRNA:   3'- aGGC-CG---GUUGCGCGU-UGUGUUgGUGu -5'
19071 5' -54.9 NC_004684.1 + 22306 0.67 0.701689
Target:  5'- gUCGGCCuccUG-GCGGCGCAACCAgAa -3'
miRNA:   3'- aGGCCGGuu-GCgCGUUGUGUUGGUgU- -5'
19071 5' -54.9 NC_004684.1 + 22482 0.67 0.701689
Target:  5'- cCCGGCgcgcacCGACGC-CAACGguGCCACc -3'
miRNA:   3'- aGGCCG------GUUGCGcGUUGUguUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 22723 0.66 0.754237
Target:  5'- --aGGCCGugGCugGCAcGCGCGACCGg- -3'
miRNA:   3'- aggCCGGUugCG--CGU-UGUGUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 22939 0.69 0.571215
Target:  5'- -gUGGCCAGCGUGCucAGCugguCGACUACGc -3'
miRNA:   3'- agGCCGGUUGCGCG--UUGu---GUUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.