miRNA display CGI


Results 21 - 40 of 342 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 62938 0.75 0.272114
Target:  5'- gCCGaCCAGCGCGCGGCGCGcGCCgACGa -3'
miRNA:   3'- aGGCcGGUUGCGCGUUGUGU-UGG-UGU- -5'
19071 5' -54.9 NC_004684.1 + 62932 0.66 0.764423
Target:  5'- -aCGGCCucGCGCGCAcguGCGGCCucCAg -3'
miRNA:   3'- agGCCGGu-UGCGCGUug-UGUUGGu-GU- -5'
19071 5' -54.9 NC_004684.1 + 62610 0.68 0.669269
Target:  5'- aCCGcGCCGAgGCGCuuGCugGCGACgCGCAc -3'
miRNA:   3'- aGGC-CGGUUgCGCGu-UG--UGUUG-GUGU- -5'
19071 5' -54.9 NC_004684.1 + 62602 0.7 0.518035
Target:  5'- gCCGGUCAugGCGUcGCGCAcCC-CGg -3'
miRNA:   3'- aGGCCGGUugCGCGuUGUGUuGGuGU- -5'
19071 5' -54.9 NC_004684.1 + 62183 0.67 0.712377
Target:  5'- cCCGGCCGAUGaugGCgAACACGuuGCCGu- -3'
miRNA:   3'- aGGCCGGUUGCg--CG-UUGUGU--UGGUgu -5'
19071 5' -54.9 NC_004684.1 + 62159 0.68 0.636538
Target:  5'- gUUCGGCC-GCGCGCgGACACcauGGCCuCAc -3'
miRNA:   3'- -AGGCCGGuUGCGCG-UUGUG---UUGGuGU- -5'
19071 5' -54.9 NC_004684.1 + 61615 0.68 0.636538
Target:  5'- cCUGGCgCAguaGCGCGCuGCGCcccACCGCGu -3'
miRNA:   3'- aGGCCG-GU---UGCGCGuUGUGu--UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 61486 0.7 0.528529
Target:  5'- gCCGGUCGuGCGCGauCAGCGCcGCCGCc -3'
miRNA:   3'- aGGCCGGU-UGCGC--GUUGUGuUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 61428 0.68 0.658379
Target:  5'- cUCGGCCGGuCGCucacCGGCGCGGCCAg- -3'
miRNA:   3'- aGGCCGGUU-GCGc---GUUGUGUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 61320 0.69 0.60377
Target:  5'- cCCGGCaucggcuacCAGCGCGgcgugguugguCAGCugGGCCGCGa -3'
miRNA:   3'- aGGCCG---------GUUGCGC-----------GUUGugUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 61211 0.73 0.364722
Target:  5'- cCUGGCCGuuCGCGuCGGCGauCAGCCACAc -3'
miRNA:   3'- aGGCCGGUu-GCGC-GUUGU--GUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 61115 0.67 0.709178
Target:  5'- gCUGGCCAGCuacgacaccaagauGgGCGACGCGcACUGCAu -3'
miRNA:   3'- aGGCCGGUUG--------------CgCGUUGUGU-UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 61102 0.69 0.592883
Target:  5'- aCCGGUCGACGCGgc-UACAguucGCCGCGc -3'
miRNA:   3'- aGGCCGGUUGCGCguuGUGU----UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 61001 0.74 0.337221
Target:  5'- cUCGGCCAACuucgccaacacgcuGCGCAACGCGcagGCCAUc -3'
miRNA:   3'- aGGCCGGUUG--------------CGCGUUGUGU---UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 60956 0.68 0.680125
Target:  5'- cUCGGCCAA-GCGCGaaggcguucACGCcGCCGCc -3'
miRNA:   3'- aGGCCGGUUgCGCGU---------UGUGuUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 60527 0.66 0.774475
Target:  5'- cCCaGaGCCA--GUGCAGCACcACCACGg -3'
miRNA:   3'- aGG-C-CGGUugCGCGUUGUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 60320 0.66 0.794132
Target:  5'- cUCGG-CAAUGCGUucgAGCGCGAUCACc -3'
miRNA:   3'- aGGCCgGUUGCGCG---UUGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 60162 0.69 0.580945
Target:  5'- aCCGGgCAcaccuccACGCGCucccaGACGCGGCCugGc -3'
miRNA:   3'- aGGCCgGU-------UGCGCG-----UUGUGUUGGugU- -5'
19071 5' -54.9 NC_004684.1 + 59937 0.73 0.391037
Target:  5'- gUCCGGCCccacguGCGCGUugugcuggcGGCGCucguGCCGCAc -3'
miRNA:   3'- -AGGCCGGu-----UGCGCG---------UUGUGu---UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 59895 0.77 0.210188
Target:  5'- -gCGGCCAGCGCGUAG-ACAACCAg- -3'
miRNA:   3'- agGCCGGUUGCGCGUUgUGUUGGUgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.