miRNA display CGI


Results 61 - 80 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 56299 0.73 0.391037
Target:  5'- cCCGGCCcuGGCGCGCcggGACGuggaGACCGCGc -3'
miRNA:   3'- aGGCCGG--UUGCGCG---UUGUg---UUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 56238 0.67 0.690935
Target:  5'- -gCGGCCAgguccAC-CGaCGGCGCGACCACc -3'
miRNA:   3'- agGCCGGU-----UGcGC-GUUGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 56161 0.72 0.447226
Target:  5'- cCUGGCCGACGacgGCGACgACGGCgGCGc -3'
miRNA:   3'- aGGCCGGUUGCg--CGUUG-UGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 55808 0.7 0.560452
Target:  5'- gUCCGGUgAGCGCGUgcgAGCACGggguGCCGg- -3'
miRNA:   3'- -AGGCCGgUUGCGCG---UUGUGU----UGGUgu -5'
19071 5' -54.9 NC_004684.1 + 55641 0.66 0.774475
Target:  5'- uUUCGGCUGGCGUGCGugGaggagGGCCugGc -3'
miRNA:   3'- -AGGCCGGUUGCGCGUugUg----UUGGugU- -5'
19071 5' -54.9 NC_004684.1 + 54549 0.68 0.680125
Target:  5'- cUCGGCCucCGCgaccacgucgGCAGCAgAGCCGCc -3'
miRNA:   3'- aGGCCGGuuGCG----------CGUUGUgUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 54477 0.66 0.764423
Target:  5'- gUUGGCCGACgGCGCAcCGgcACCGCu -3'
miRNA:   3'- aGGCCGGUUG-CGCGUuGUguUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 54364 0.68 0.676872
Target:  5'- aCCGGCCcggcgacguaaccgGGCGCGUcggggGACAUAAuCCACc -3'
miRNA:   3'- aGGCCGG--------------UUGCGCG-----UUGUGUU-GGUGu -5'
19071 5' -54.9 NC_004684.1 + 54287 0.66 0.754237
Target:  5'- gCUGGCCGguggggcgGCGUGCAccGCGCgAACCGgGg -3'
miRNA:   3'- aGGCCGGU--------UGCGCGU--UGUG-UUGGUgU- -5'
19071 5' -54.9 NC_004684.1 + 54287 0.68 0.658379
Target:  5'- cCCGGCCGgggguGCGCGCAu--CGGCCc-- -3'
miRNA:   3'- aGGCCGGU-----UGCGCGUuguGUUGGugu -5'
19071 5' -54.9 NC_004684.1 + 54127 0.72 0.409254
Target:  5'- -gCGGCCAccaGCGCGCuggcgguCACGGCCugGc -3'
miRNA:   3'- agGCCGGU---UGCGCGuu-----GUGUUGGugU- -5'
19071 5' -54.9 NC_004684.1 + 54010 0.69 0.625606
Target:  5'- aUCGGCCAGCG---GACACcACCACGu -3'
miRNA:   3'- aGGCCGGUUGCgcgUUGUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 53944 0.66 0.784381
Target:  5'- gUCGGCCAG-GCaCAGCugAgcACCGCAc -3'
miRNA:   3'- aGGCCGGUUgCGcGUUGugU--UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 53716 0.66 0.760364
Target:  5'- aCCGGCCAccauguccuggacCGUGCGcCACGagacACCACGc -3'
miRNA:   3'- aGGCCGGUu------------GCGCGUuGUGU----UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 53537 0.66 0.753211
Target:  5'- gCCaGGUCGGCGCGgAugACcucggagAACCACGa -3'
miRNA:   3'- aGG-CCGGUUGCGCgUugUG-------UUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 53418 0.69 0.625606
Target:  5'- gCUGGCC--UGCGCcGCGCGACUGCc -3'
miRNA:   3'- aGGCCGGuuGCGCGuUGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 53201 0.69 0.625606
Target:  5'- gCUGGCCAggaAUGCGUccagggugcccAGCACcACCACGu -3'
miRNA:   3'- aGGCCGGU---UGCGCG-----------UUGUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 53084 0.68 0.680125
Target:  5'- aCCGGCguACaccuGCGCGGCggccuGCAagGCCACAu -3'
miRNA:   3'- aGGCCGguUG----CGCGUUG-----UGU--UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 52976 0.66 0.764423
Target:  5'- cUUGGCCAGCaguucGCGCAGCAUcuCCuGCGg -3'
miRNA:   3'- aGGCCGGUUG-----CGCGUUGUGuuGG-UGU- -5'
19071 5' -54.9 NC_004684.1 + 52907 0.76 0.239484
Target:  5'- gUCCGGCCAGCaCgGCGGCGUGGCCGCAu -3'
miRNA:   3'- -AGGCCGGUUGcG-CGUUGUGUUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.