miRNA display CGI


Results 81 - 100 of 342 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 52900 0.71 0.497303
Target:  5'- aCCGGCgacCGGCGUGguACcgGCAACCACc -3'
miRNA:   3'- aGGCCG---GUUGCGCguUG--UGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 52458 0.66 0.764423
Target:  5'- aCCGGgaugcCCGACG-GCAugGCcGCCACc -3'
miRNA:   3'- aGGCC-----GGUUGCgCGUugUGuUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 52236 0.67 0.733508
Target:  5'- aUCaGGCCGugGUGC--CACAGCgGCGg -3'
miRNA:   3'- -AGgCCGGUugCGCGuuGUGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 51814 0.66 0.794132
Target:  5'- -aCGGCCAggccGCGCGCGcugcGCugGAgCAUc -3'
miRNA:   3'- agGCCGGU----UGCGCGU----UGugUUgGUGu -5'
19071 5' -54.9 NC_004684.1 + 51769 0.66 0.754237
Target:  5'- cCCGGCCucGCGCGCGuugccuucggGCACccgguAgCGCAc -3'
miRNA:   3'- aGGCCGGu-UGCGCGU----------UGUGu----UgGUGU- -5'
19071 5' -54.9 NC_004684.1 + 51653 0.66 0.754237
Target:  5'- -gCGGCCAGuCGCuggGCAACuc-GCCACGa -3'
miRNA:   3'- agGCCGGUU-GCG---CGUUGuguUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 51562 0.74 0.323655
Target:  5'- cUCUGcGCCAguGCGCGCuGCGCGGCgGCGa -3'
miRNA:   3'- -AGGC-CGGU--UGCGCGuUGUGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 51241 0.66 0.793164
Target:  5'- aUCGGCCGgucgaugccgcacGCGCGCAugAuCGGCUcguACAg -3'
miRNA:   3'- aGGCCGGU-------------UGCGCGUugU-GUUGG---UGU- -5'
19071 5' -54.9 NC_004684.1 + 51171 0.69 0.625606
Target:  5'- -gUGGCCGAUGCGCcGgGCcaugGACCGCGc -3'
miRNA:   3'- agGCCGGUUGCGCGuUgUG----UUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 50791 0.67 0.743928
Target:  5'- -gCGGUCggUGCGCAACAUGAagucgUCGCGc -3'
miRNA:   3'- agGCCGGuuGCGCGUUGUGUU-----GGUGU- -5'
19071 5' -54.9 NC_004684.1 + 50369 0.66 0.774475
Target:  5'- aCCGGgCGGCGUGguGCuuauucucguCGGCCAUAu -3'
miRNA:   3'- aGGCCgGUUGCGCguUGu---------GUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 50280 0.67 0.722987
Target:  5'- gCUGGCCAGCGCcaGGCcCGACgGCGa -3'
miRNA:   3'- aGGCCGGUUGCGcgUUGuGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 50107 0.66 0.794132
Target:  5'- cCCGGCCAGaaaaccaGCGCcGCcgaGCAGuuGCAg -3'
miRNA:   3'- aGGCCGGUUg------CGCGuUG---UGUUggUGU- -5'
19071 5' -54.9 NC_004684.1 + 49128 0.68 0.636538
Target:  5'- -gCGGCCgGGCGUGCcguugccgucgAugGCGGCCACGu -3'
miRNA:   3'- agGCCGG-UUGCGCG-----------UugUGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 48790 0.66 0.754237
Target:  5'- gCgGGCCGAUGaUGCAGgACAgGCCGCc -3'
miRNA:   3'- aGgCCGGUUGC-GCGUUgUGU-UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 48298 0.66 0.764423
Target:  5'- aCCGGCCuuCGCGCAccaGCAgu-UCGCu -3'
miRNA:   3'- aGGCCGGuuGCGCGU---UGUguuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 48185 0.72 0.447227
Target:  5'- aCCGGCuCAGgcuauCGCGCGgGCACGcACCACGg -3'
miRNA:   3'- aGGCCG-GUU-----GCGCGU-UGUGU-UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 48031 0.67 0.722987
Target:  5'- cUCGGCCAuguUGCGCcGCugGAUCAg- -3'
miRNA:   3'- aGGCCGGUu--GCGCGuUGugUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 47940 0.66 0.794132
Target:  5'- uUCCaGGCCuugGugGCGuCGGCACGGCUg-- -3'
miRNA:   3'- -AGG-CCGG---UugCGC-GUUGUGUUGGugu -5'
19071 5' -54.9 NC_004684.1 + 47637 0.67 0.722987
Target:  5'- aCCGGCaggcCGCGCAgguacuGCACGcuccagguGCCGCGc -3'
miRNA:   3'- aGGCCGguu-GCGCGU------UGUGU--------UGGUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.