miRNA display CGI


Results 101 - 120 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 47330 0.67 0.701689
Target:  5'- gCCGGUguGgGCGUcgAGCAUGGCCACc -3'
miRNA:   3'- aGGCCGguUgCGCG--UUGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 47150 0.66 0.784381
Target:  5'- gCCGGaaguaguaCCGGCGCGCcaGGCGCAcCCAg- -3'
miRNA:   3'- aGGCC--------GGUUGCGCG--UUGUGUuGGUgu -5'
19071 5' -54.9 NC_004684.1 + 46926 0.67 0.737688
Target:  5'- aCCGGCCAACGgcggugugggugaccCguucgggaugauGCAACGCAGCgGCu -3'
miRNA:   3'- aGGCCGGUUGC---------------G------------CGUUGUGUUGgUGu -5'
19071 5' -54.9 NC_004684.1 + 46795 0.7 0.549744
Target:  5'- gUCCGGUCGugGCGguagucccCGugGCGugCGCAc -3'
miRNA:   3'- -AGGCCGGUugCGC--------GUugUGUugGUGU- -5'
19071 5' -54.9 NC_004684.1 + 46056 0.7 0.528529
Target:  5'- -aCGGUCuugcCGCGCGGCugGACCAgGa -3'
miRNA:   3'- agGCCGGuu--GCGCGUUGugUUGGUgU- -5'
19071 5' -54.9 NC_004684.1 + 45643 0.74 0.339658
Target:  5'- --aGGCgCAGCGCGCGGC-CGACCAUc -3'
miRNA:   3'- aggCCG-GUUGCGCGUUGuGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 45186 0.66 0.793164
Target:  5'- gUCGGCCAccaccccgccGCGCuccagcgGCAGCGCGuCCAUg -3'
miRNA:   3'- aGGCCGGU----------UGCG-------CGUUGUGUuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 45004 0.68 0.647466
Target:  5'- aUCC-GCCGACGCcgccuGCAcguccaccgccaGCGCGACCGCc -3'
miRNA:   3'- -AGGcCGGUUGCG-----CGU------------UGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 44930 0.68 0.668182
Target:  5'- aCCGGCCuggaGCGCGGgcgggauCGCcGCCGCGc -3'
miRNA:   3'- aGGCCGGuug-CGCGUU-------GUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 44666 0.69 0.582029
Target:  5'- aCCGGUC-GCGCGU-GC-CAGCCACGg -3'
miRNA:   3'- aGGCCGGuUGCGCGuUGuGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 44588 0.66 0.784381
Target:  5'- gCCGGUCGACcaGCGUGuugaagucGC-CAGCCACGc -3'
miRNA:   3'- aGGCCGGUUG--CGCGU--------UGuGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 44432 0.7 0.514902
Target:  5'- gUCCGGCCcgGugGCGUAgucgaccagcuugaGCACGcugGCCACc -3'
miRNA:   3'- -AGGCCGG--UugCGCGU--------------UGUGU---UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 43994 0.72 0.451131
Target:  5'- cCCGGCCAGCuGCGUuggccaggucaucCACGACCAUu -3'
miRNA:   3'- aGGCCGGUUG-CGCGuu-----------GUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 43962 0.67 0.722987
Target:  5'- aUCGGCCAccgUGCGCAGCACcggGAgCAUg -3'
miRNA:   3'- aGGCCGGUu--GCGCGUUGUG---UUgGUGu -5'
19071 5' -54.9 NC_004684.1 + 43490 0.66 0.793164
Target:  5'- -gCGGCgGGCGCaGCGGCagcagguGCAGCgGCAg -3'
miRNA:   3'- agGCCGgUUGCG-CGUUG-------UGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 43454 0.67 0.690935
Target:  5'- -gCGGCgGGCGCgGCAGCagguGCGGCgGCAg -3'
miRNA:   3'- agGCCGgUUGCG-CGUUG----UGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 43238 0.77 0.215789
Target:  5'- uUCUcGCCAGCGCGCGggccggagaGCACGGCCAUg -3'
miRNA:   3'- -AGGcCGGUUGCGCGU---------UGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 42781 0.69 0.571215
Target:  5'- cCUGGCCGcccAUGCGCGcCACGuCCGCu -3'
miRNA:   3'- aGGCCGGU---UGCGCGUuGUGUuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 42644 0.66 0.751157
Target:  5'- cCCuGCCAGCaggucacgaaucugGCGCAGCACGcCCAg- -3'
miRNA:   3'- aGGcCGGUUG--------------CGCGUUGUGUuGGUgu -5'
19071 5' -54.9 NC_004684.1 + 42502 0.72 0.447226
Target:  5'- aCCaGGCCAACGCGaucaaCGGCGCGcucACCGCc -3'
miRNA:   3'- aGG-CCGGUUGCGC-----GUUGUGU---UGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.