miRNA display CGI


Results 81 - 100 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 10520 0.71 0.476952
Target:  5'- -aCGGUCAGCGCGCAcCGCucGCCGg- -3'
miRNA:   3'- agGCCGGUUGCGCGUuGUGu-UGGUgu -5'
19071 5' -54.9 NC_004684.1 + 62995 0.71 0.476952
Target:  5'- gCCGGUggccgggaacgCGAUGCGCAGgAUGACCGCGc -3'
miRNA:   3'- aGGCCG-----------GUUGCGCGUUgUGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 59548 0.71 0.494225
Target:  5'- aCC-GCCAGCGCGCGccguugucgcaccaGCGCAuguccaucaGCCGCAc -3'
miRNA:   3'- aGGcCGGUUGCGCGU--------------UGUGU---------UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 15683 0.71 0.497303
Target:  5'- -gUGGCCAGCG-GCGGCACcgacGCCACc -3'
miRNA:   3'- agGCCGGUUGCgCGUUGUGu---UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 59599 0.71 0.497303
Target:  5'- cCCGGUCAcauccCGCGCAccaauGCuCGACCACGg -3'
miRNA:   3'- aGGCCGGUu----GCGCGU-----UGuGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 26397 0.71 0.50142
Target:  5'- aUCUGGCCAACGCcGCcaccGGCGCGcuggcagcgggguucGCCGCc -3'
miRNA:   3'- -AGGCCGGUUGCG-CG----UUGUGU---------------UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 26449 0.71 0.507624
Target:  5'- cCCGGUguACG-GCGGCACGccugGCCGCGa -3'
miRNA:   3'- aGGCCGguUGCgCGUUGUGU----UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 24799 0.71 0.460973
Target:  5'- -aCGGCCAAggcggucggcaacauCGCGCAGgAC-ACCACAc -3'
miRNA:   3'- agGCCGGUU---------------GCGCGUUgUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 2883 0.71 0.457023
Target:  5'- aCCuGCUggUGCGCAACACGuucGCCgACAa -3'
miRNA:   3'- aGGcCGGuuGCGCGUUGUGU---UGG-UGU- -5'
19071 5' -54.9 NC_004684.1 + 43994 0.72 0.451131
Target:  5'- cCCGGCCAGCuGCGUuggccaggucaucCACGACCAUu -3'
miRNA:   3'- aGGCCGGUUG-CGCGuu-----------GUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 66903 0.73 0.382129
Target:  5'- -gCGGCCuuCgGCGCGGCcuugGCGGCCACAa -3'
miRNA:   3'- agGCCGGuuG-CGCGUUG----UGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 56299 0.73 0.391037
Target:  5'- cCCGGCCcuGGCGCGCcggGACGuggaGACCGCGc -3'
miRNA:   3'- aGGCCGG--UUGCGCG---UUGUg---UUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 59937 0.73 0.391037
Target:  5'- gUCCGGCCccacguGCGCGUugugcuggcGGCGCucguGCCGCAc -3'
miRNA:   3'- -AGGCCGGu-----UGCGCG---------UUGUGu---UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 65434 0.72 0.409254
Target:  5'- gCUGcGCUGGCGUGCGgcGCGCGGCCACc -3'
miRNA:   3'- aGGC-CGGUUGCGCGU--UGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 34343 0.72 0.436587
Target:  5'- aCCGGCCucGCaGCGUAagggagaACAUGACCGCAc -3'
miRNA:   3'- aGGCCGGu-UG-CGCGU-------UGUGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 39064 0.72 0.437548
Target:  5'- -gUGGCCAGCGU-CAACACGAUCAUg -3'
miRNA:   3'- agGCCGGUUGCGcGUUGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 6165 0.72 0.447226
Target:  5'- -gCGGCCAGCGUGCGGCgguaggcaccggGCAGgUACAu -3'
miRNA:   3'- agGCCGGUUGCGCGUUG------------UGUUgGUGU- -5'
19071 5' -54.9 NC_004684.1 + 42502 0.72 0.447226
Target:  5'- aCCaGGCCAACGCGaucaaCGGCGCGcucACCGCc -3'
miRNA:   3'- aGG-CCGGUUGCGC-----GUUGUGU---UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 56161 0.72 0.447226
Target:  5'- cCUGGCCGACGacgGCGACgACGGCgGCGc -3'
miRNA:   3'- aGGCCGGUUGCg--CGUUG-UGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 27906 0.71 0.507624
Target:  5'- cCCGGCCuGCGCgaguuccuggGCGACACcaucuACCGCc -3'
miRNA:   3'- aGGCCGGuUGCG----------CGUUGUGu----UGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.