miRNA display CGI


Results 101 - 120 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 19809 0.7 0.528529
Target:  5'- gCUGGCCAaggaguucgucaGCGCGUGugACGGCgGCGc -3'
miRNA:   3'- aGGCCGGU------------UGCGCGUugUGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 39626 0.7 0.528529
Target:  5'- cCUGGCgGggguCGCGCGGCACggUCACc -3'
miRNA:   3'- aGGCCGgUu---GCGCGUUGUGuuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 46056 0.7 0.528529
Target:  5'- -aCGGUCuugcCGCGCGGCugGACCAgGa -3'
miRNA:   3'- agGCCGGuu--GCGCGUUGugUUGGUgU- -5'
19071 5' -54.9 NC_004684.1 + 65326 0.7 0.528529
Target:  5'- -aCGGCCAGCGCcagGCAGgcCACGAUgGCGg -3'
miRNA:   3'- agGCCGGUUGCG---CGUU--GUGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 5700 0.7 0.539101
Target:  5'- gCCGGUggagCAGCGCGCccuCGC-GCCGCAg -3'
miRNA:   3'- aGGCCG----GUUGCGCGuu-GUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 15683 0.71 0.497303
Target:  5'- -gUGGCCAGCG-GCGGCACcgacGCCACc -3'
miRNA:   3'- agGCCGGUUGCgCGUUGUGu---UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 59548 0.71 0.494225
Target:  5'- aCC-GCCAGCGCGCGccguugucgcaccaGCGCAuguccaucaGCCGCAc -3'
miRNA:   3'- aGGcCGGUUGCGCGU--------------UGUGU---------UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 34343 0.72 0.436587
Target:  5'- aCCGGCCucGCaGCGUAagggagaACAUGACCGCAc -3'
miRNA:   3'- aGGCCGGu-UG-CGCGU-------UGUGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 39064 0.72 0.437548
Target:  5'- -gUGGCCAGCGU-CAACACGAUCAUg -3'
miRNA:   3'- agGCCGGUUGCGcGUUGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 6165 0.72 0.447226
Target:  5'- -gCGGCCAGCGUGCGGCgguaggcaccggGCAGgUACAu -3'
miRNA:   3'- agGCCGGUUGCGCGUUG------------UGUUgGUGU- -5'
19071 5' -54.9 NC_004684.1 + 42502 0.72 0.447226
Target:  5'- aCCaGGCCAACGCGaucaaCGGCGCGcucACCGCc -3'
miRNA:   3'- aGG-CCGGUUGCGC-----GUUGUGU---UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 56161 0.72 0.447226
Target:  5'- cCUGGCCGACGacgGCGACgACGGCgGCGc -3'
miRNA:   3'- aGGCCGGUUGCg--CGUUG-UGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 43994 0.72 0.451131
Target:  5'- cCCGGCCAGCuGCGUuggccaggucaucCACGACCAUu -3'
miRNA:   3'- aGGCCGGUUG-CGCGuu-----------GUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 2883 0.71 0.457023
Target:  5'- aCCuGCUggUGCGCAACACGuucGCCgACAa -3'
miRNA:   3'- aGGcCGGuuGCGCGUUGUGU---UGG-UGU- -5'
19071 5' -54.9 NC_004684.1 + 24799 0.71 0.460973
Target:  5'- -aCGGCCAAggcggucggcaacauCGCGCAGgAC-ACCACAc -3'
miRNA:   3'- agGCCGGUU---------------GCGCGUUgUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 2707 0.71 0.465937
Target:  5'- cCUGGCCggUGCcggggGCAagugcgccacaccGCACGGCCACAc -3'
miRNA:   3'- aGGCCGGuuGCG-----CGU-------------UGUGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 13091 0.71 0.466933
Target:  5'- cCCGGUUcGCGCGguGCAC-GCCGCc -3'
miRNA:   3'- aGGCCGGuUGCGCguUGUGuUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 26332 0.71 0.466933
Target:  5'- gCCGauuGCCGACGCGguGCGCucgGCCAUu -3'
miRNA:   3'- aGGC---CGGUUGCGCguUGUGu--UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 10520 0.71 0.476952
Target:  5'- -aCGGUCAGCGCGCAcCGCucGCCGg- -3'
miRNA:   3'- agGCCGGUUGCGCGUuGUGu-UGGUgu -5'
19071 5' -54.9 NC_004684.1 + 62995 0.71 0.476952
Target:  5'- gCCGGUggccgggaacgCGAUGCGCAGgAUGACCGCGc -3'
miRNA:   3'- aGGCCG-----------GUUGCGCGUUgUGUUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.