miRNA display CGI


Results 41 - 60 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 4414 0.71 0.466933
Target:  5'- aCCGGCC-ACGUGCGcaccaccgaGCAC-GCCACc -3'
miRNA:   3'- aGGCCGGuUGCGCGU---------UGUGuUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 6467 0.73 0.391037
Target:  5'- aCUGGCCGagGCGUGCGACGCcguGGCCGa- -3'
miRNA:   3'- aGGCCGGU--UGCGCGUUGUG---UUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 16480 0.79 0.1744
Target:  5'- gUCCGGCC-ACGUGCAGCuggcCAugCACGa -3'
miRNA:   3'- -AGGCCGGuUGCGCGUUGu---GUugGUGU- -5'
19071 5' -54.9 NC_004684.1 + 42476 0.71 0.466933
Target:  5'- gCCGcCCAGCGCGCugauCGCGGCgGCGg -3'
miRNA:   3'- aGGCcGGUUGCGCGuu--GUGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 66096 0.79 0.160358
Target:  5'- gUCCGGCCAcgcgucGCGCGCGuaccggaACAUGGCCACc -3'
miRNA:   3'- -AGGCCGGU------UGCGCGU-------UGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 31209 0.69 0.582029
Target:  5'- gCUGagguGCCAGCGCGUcGCcaACGACCGCGa -3'
miRNA:   3'- aGGC----CGGUUGCGCGuUG--UGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 2527 0.77 0.221517
Target:  5'- aCCGGaCAACGCGCAcCACcccACCACAa -3'
miRNA:   3'- aGGCCgGUUGCGCGUuGUGu--UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 42781 0.69 0.571215
Target:  5'- cCUGGCCGcccAUGCGCGcCACGuCCGCu -3'
miRNA:   3'- aGGCCGGU---UGCGCGUuGUGUuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 21540 0.7 0.560452
Target:  5'- gCCGacGCCAucaacgaGCGCGGCAUGACCGCc -3'
miRNA:   3'- aGGC--CGGUug-----CGCGUUGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 66944 0.7 0.538041
Target:  5'- -aCGGCCAcgauGCGCGCAGCGguguccuCGuCCACGu -3'
miRNA:   3'- agGCCGGU----UGCGCGUUGU-------GUuGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 31764 0.7 0.518035
Target:  5'- cUCGGCCAccACGCGCGGaaagUAguGCCGCGc -3'
miRNA:   3'- aGGCCGGU--UGCGCGUU----GUguUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 18676 0.71 0.487078
Target:  5'- aCCGGCaAGCGCugGCAGgGCcGCCGCAc -3'
miRNA:   3'- aGGCCGgUUGCG--CGUUgUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 63156 0.71 0.466933
Target:  5'- -gCGGCUccuGCGCGCcGCGCAGgCGCAu -3'
miRNA:   3'- agGCCGGu--UGCGCGuUGUGUUgGUGU- -5'
19071 5' -54.9 NC_004684.1 + 2080 0.71 0.457023
Target:  5'- gCUGGCCGugGUGCAcaGCGaGGCCGCc -3'
miRNA:   3'- aGGCCGGUugCGCGU--UGUgUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 8718 0.72 0.447227
Target:  5'- -aCGGUCGACGgGgAACAUGGCCACc -3'
miRNA:   3'- agGCCGGUUGCgCgUUGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 15070 0.72 0.437548
Target:  5'- gCUGGCC--UGCGCAccGCGCAGCUGCGc -3'
miRNA:   3'- aGGCCGGuuGCGCGU--UGUGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 9040 0.72 0.409254
Target:  5'- aCCGGCgcggCAACGC-CAGCAgGGCCACc -3'
miRNA:   3'- aGGCCG----GUUGCGcGUUGUgUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 17785 0.73 0.364722
Target:  5'- aCCGGCCAGC-CGCAACGacGCCuGCGg -3'
miRNA:   3'- aGGCCGGUUGcGCGUUGUguUGG-UGU- -5'
19071 5' -54.9 NC_004684.1 + 17854 0.75 0.303701
Target:  5'- gUCGGCCAcCGCGCAcaccgccgggugcacGCugGGCCGCu -3'
miRNA:   3'- aGGCCGGUuGCGCGU---------------UGugUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 63687 0.77 0.226193
Target:  5'- aCCGGCCAGCGCGgCGGCGCuggcgaucuccuGCCAg- -3'
miRNA:   3'- aGGCCGGUUGCGC-GUUGUGu-----------UGGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.