miRNA display CGI


Results 61 - 80 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 63156 0.71 0.466933
Target:  5'- -gCGGCUccuGCGCGCcGCGCAGgCGCAu -3'
miRNA:   3'- agGCCGGu--UGCGCGuUGUGUUgGUGU- -5'
19071 5' -54.9 NC_004684.1 + 52900 0.71 0.497303
Target:  5'- aCCGGCgacCGGCGUGguACcgGCAACCACc -3'
miRNA:   3'- aGGCCG---GUUGCGCguUG--UGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 63256 0.77 0.221517
Target:  5'- gUCCGcGCCGAUGCGCucCugGACCugGa -3'
miRNA:   3'- -AGGC-CGGUUGCGCGuuGugUUGGugU- -5'
19071 5' -54.9 NC_004684.1 + 37248 0.76 0.245738
Target:  5'- aCUGGCCGACGCGCAcacuGCGCGguGCCu-- -3'
miRNA:   3'- aGGCCGGUUGCGCGU----UGUGU--UGGugu -5'
19071 5' -54.9 NC_004684.1 + 61001 0.74 0.337221
Target:  5'- cUCGGCCAACuucgccaacacgcuGCGCAACGCGcagGCCAUc -3'
miRNA:   3'- aGGCCGGUUG--------------CGCGUUGUGU---UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 4158 0.73 0.382129
Target:  5'- cUCgGGCCGACGCccgGCAACG-AGCCGCc -3'
miRNA:   3'- -AGgCCGGUUGCG---CGUUGUgUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 54127 0.72 0.409254
Target:  5'- -gCGGCCAccaGCGCGCuggcgguCACGGCCugGc -3'
miRNA:   3'- agGCCGGU---UGCGCGuu-----GUGUUGGugU- -5'
19071 5' -54.9 NC_004684.1 + 18406 0.72 0.437548
Target:  5'- cCCGGCCAGCaGgGCAccgACGCGcCCGCc -3'
miRNA:   3'- aGGCCGGUUG-CgCGU---UGUGUuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 21724 0.72 0.447227
Target:  5'- cCCGGUCAaaaaaccucuACGCGCAGaugguCGGCCGCGc -3'
miRNA:   3'- aGGCCGGU----------UGCGCGUUgu---GUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 3295 0.71 0.466933
Target:  5'- --aGGCCAugGCaCAGCGCGAgCGCGa -3'
miRNA:   3'- aggCCGGUugCGcGUUGUGUUgGUGU- -5'
19071 5' -54.9 NC_004684.1 + 9293 0.68 0.643096
Target:  5'- cCCGGCCAugcucgGCGCGCucccggucgagcuGCACgGugCGCAc -3'
miRNA:   3'- aGGCCGGU------UGCGCGu------------UGUG-UugGUGU- -5'
19071 5' -54.9 NC_004684.1 + 62159 0.68 0.636538
Target:  5'- gUUCGGCC-GCGCGCgGACACcauGGCCuCAc -3'
miRNA:   3'- -AGGCCGGuUGCGCG-UUGUG---UUGGuGU- -5'
19071 5' -54.9 NC_004684.1 + 61486 0.7 0.528529
Target:  5'- gCCGGUCGuGCGCGauCAGCGCcGCCGCc -3'
miRNA:   3'- aGGCCGGU-UGCGC--GUUGUGuUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 15818 0.7 0.539101
Target:  5'- cCCGGUCGccgcCGCGCAGCGCGcacuGgCGCAg -3'
miRNA:   3'- aGGCCGGUu---GCGCGUUGUGU----UgGUGU- -5'
19071 5' -54.9 NC_004684.1 + 42781 0.69 0.571215
Target:  5'- cCUGGCCGcccAUGCGCGcCACGuCCGCu -3'
miRNA:   3'- aGGCCGGU---UGCGCGUuGUGUuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 31209 0.69 0.582029
Target:  5'- gCUGagguGCCAGCGCGUcGCcaACGACCGCGa -3'
miRNA:   3'- aGGC----CGGUUGCGCGuUG--UGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 8762 0.69 0.592883
Target:  5'- --aGGCCca-GCGCGGCAcCAGCCGCc -3'
miRNA:   3'- aggCCGGuugCGCGUUGU-GUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 61320 0.69 0.60377
Target:  5'- cCCGGCaucggcuacCAGCGCGgcgugguugguCAGCugGGCCGCGa -3'
miRNA:   3'- aGGCCG---------GUUGCGC-----------GUUGugUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 25501 0.69 0.625606
Target:  5'- gUCGGCCAGCGCGUucauguCGCgGGCCuGCGu -3'
miRNA:   3'- aGGCCGGUUGCGCGuu----GUG-UUGG-UGU- -5'
19071 5' -54.9 NC_004684.1 + 16426 0.69 0.625606
Target:  5'- gUCGGCCuacGACGUGCuGGCGCAcACCAUc -3'
miRNA:   3'- aGGCCGG---UUGCGCG-UUGUGU-UGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.