miRNA display CGI


Results 81 - 100 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 7189 0.7 0.539101
Target:  5'- --aGGCCAACGCcgauCAGCACAuccugccagGCCGCGu -3'
miRNA:   3'- aggCCGGUUGCGc---GUUGUGU---------UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 39305 0.7 0.560452
Target:  5'- cCCGGUgCGgguCGCGCGGCGgccCGGCCACAc -3'
miRNA:   3'- aGGCCG-GUu--GCGCGUUGU---GUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 26728 0.69 0.582029
Target:  5'- gCUGGCCGA-GCGCGACugGcgggGCCAg- -3'
miRNA:   3'- aGGCCGGUUgCGCGUUGugU----UGGUgu -5'
19071 5' -54.9 NC_004684.1 + 44666 0.69 0.582029
Target:  5'- aCCGGUC-GCGCGU-GC-CAGCCACGg -3'
miRNA:   3'- aGGCCGGuUGCGCGuUGuGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 21332 0.69 0.60377
Target:  5'- cCUGGuCCAGcCGCGCGGCAagacCGugCGCAu -3'
miRNA:   3'- aGGCC-GGUU-GCGCGUUGU----GUugGUGU- -5'
19071 5' -54.9 NC_004684.1 + 25501 0.69 0.625606
Target:  5'- gUCGGCCAGCGCGUucauguCGCgGGCCuGCGu -3'
miRNA:   3'- aGGCCGGUUGCGCGuu----GUG-UUGG-UGU- -5'
19071 5' -54.9 NC_004684.1 + 16426 0.69 0.625606
Target:  5'- gUCGGCCuacGACGUGCuGGCGCAcACCAUc -3'
miRNA:   3'- aGGCCGG---UUGCGCG-UUGUGU-UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 3295 0.71 0.466933
Target:  5'- --aGGCCAugGCaCAGCGCGAgCGCGa -3'
miRNA:   3'- aggCCGGUugCGcGUUGUGUUgGUGU- -5'
19071 5' -54.9 NC_004684.1 + 21724 0.72 0.447227
Target:  5'- cCCGGUCAaaaaaccucuACGCGCAGaugguCGGCCGCGc -3'
miRNA:   3'- aGGCCGGU----------UGCGCGUUgu---GUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 18406 0.72 0.437548
Target:  5'- cCCGGCCAGCaGgGCAccgACGCGcCCGCc -3'
miRNA:   3'- aGGCCGGUUG-CgCGU---UGUGUuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 11928 0.68 0.658379
Target:  5'- cUCGGCCAggccuucaccGCGCuugGCGACAUAgACCACc -3'
miRNA:   3'- aGGCCGGU----------UGCG---CGUUGUGU-UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 1964 0.68 0.669269
Target:  5'- gCCGcacGCCAGCGCaGCGccuggcGCGCgAACCGCGu -3'
miRNA:   3'- aGGC---CGGUUGCG-CGU------UGUG-UUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 681 0.68 0.669269
Target:  5'- aCCGaGuUCGcCGCGCAGCGCAagACCGCc -3'
miRNA:   3'- aGGC-C-GGUuGCGCGUUGUGU--UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 12239 0.68 0.680125
Target:  5'- uUCCGG-CAGCG-GCucCACcGCCACAa -3'
miRNA:   3'- -AGGCCgGUUGCgCGuuGUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 1691 0.67 0.690935
Target:  5'- gCCGaGCUGGCGCGCAu--CGAgCGCAa -3'
miRNA:   3'- aGGC-CGGUUGCGCGUuguGUUgGUGU- -5'
19071 5' -54.9 NC_004684.1 + 63256 0.77 0.221517
Target:  5'- gUCCGcGCCGAUGCGCucCugGACCugGa -3'
miRNA:   3'- -AGGC-CGGUUGCGCGuuGugUUGGugU- -5'
19071 5' -54.9 NC_004684.1 + 37248 0.76 0.245738
Target:  5'- aCUGGCCGACGCGCAcacuGCGCGguGCCu-- -3'
miRNA:   3'- aGGCCGGUUGCGCGU----UGUGU--UGGugu -5'
19071 5' -54.9 NC_004684.1 + 61001 0.74 0.337221
Target:  5'- cUCGGCCAACuucgccaacacgcuGCGCAACGCGcagGCCAUc -3'
miRNA:   3'- aGGCCGGUUG--------------CGCGUUGUGU---UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 4158 0.73 0.382129
Target:  5'- cUCgGGCCGACGCccgGCAACG-AGCCGCc -3'
miRNA:   3'- -AGgCCGGUUGCG---CGUUGUgUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 54127 0.72 0.409254
Target:  5'- -gCGGCCAccaGCGCGCuggcgguCACGGCCugGc -3'
miRNA:   3'- agGCCGGU---UGCGCGuu-----GUGUUGGugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.