miRNA display CGI


Results 21 - 40 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 64504 0.66 0.784381
Target:  5'- gUCGGCgAACGUGUuGCGCA-CCAgCAg -3'
miRNA:   3'- aGGCCGgUUGCGCGuUGUGUuGGU-GU- -5'
19071 5' -54.9 NC_004684.1 + 992 0.66 0.784381
Target:  5'- cUCGGCCAGCaccaagGUGCGgagauuuccaccGCGCAGCuCGCGg -3'
miRNA:   3'- aGGCCGGUUG------CGCGU------------UGUGUUG-GUGU- -5'
19071 5' -54.9 NC_004684.1 + 37179 0.66 0.784381
Target:  5'- gUCGcGCCGagcaucgacGCGCGCGGC-CAGCUGCu -3'
miRNA:   3'- aGGC-CGGU---------UGCGCGUUGuGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 28082 0.66 0.784381
Target:  5'- gCCGGgCCGcCGCGCGACcCGcACCGg- -3'
miRNA:   3'- aGGCC-GGUuGCGCGUUGuGU-UGGUgu -5'
19071 5' -54.9 NC_004684.1 + 20258 0.66 0.784381
Target:  5'- uUCCGGcCCGGCGCGUucC-CGGCCc-- -3'
miRNA:   3'- -AGGCC-GGUUGCGCGuuGuGUUGGugu -5'
19071 5' -54.9 NC_004684.1 + 4020 0.66 0.784381
Target:  5'- aUCGGCUGGCGCGU----CGGCCGCu -3'
miRNA:   3'- aGGCCGGUUGCGCGuuguGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 47150 0.66 0.784381
Target:  5'- gCCGGaaguaguaCCGGCGCGCcaGGCGCAcCCAg- -3'
miRNA:   3'- aGGCC--------GGUUGCGCG--UUGUGUuGGUgu -5'
19071 5' -54.9 NC_004684.1 + 40801 0.66 0.784381
Target:  5'- gCCGGUggCGAaccCGCGC-ACACcGCCGCGc -3'
miRNA:   3'- aGGCCG--GUU---GCGCGuUGUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 29652 0.66 0.783398
Target:  5'- aCC-GCCAacgacgugcuccuGCGCGCGGC-CGACCAg- -3'
miRNA:   3'- aGGcCGGU-------------UGCGCGUUGuGUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 55641 0.66 0.774475
Target:  5'- uUUCGGCUGGCGUGCGugGaggagGGCCugGc -3'
miRNA:   3'- -AGGCCGGUUGCGCGUugUg----UUGGugU- -5'
19071 5' -54.9 NC_004684.1 + 25319 0.66 0.774475
Target:  5'- gUCGGCCcuGGCgGCGUAugGCGGCCu-- -3'
miRNA:   3'- aGGCCGG--UUG-CGCGUugUGUUGGugu -5'
19071 5' -54.9 NC_004684.1 + 25957 0.66 0.774475
Target:  5'- aCCGGCggCAcCGcCGCAcCACcGCCACGg -3'
miRNA:   3'- aGGCCG--GUuGC-GCGUuGUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 7435 0.66 0.774475
Target:  5'- -gCGGCacgAGCGcCGcCAGCACAACgCGCAc -3'
miRNA:   3'- agGCCGg--UUGC-GC-GUUGUGUUG-GUGU- -5'
19071 5' -54.9 NC_004684.1 + 27717 0.66 0.774475
Target:  5'- -gCGGCCGA-GCGCgAGCACGagGCaCGCGg -3'
miRNA:   3'- agGCCGGUUgCGCG-UUGUGU--UG-GUGU- -5'
19071 5' -54.9 NC_004684.1 + 15573 0.66 0.774475
Target:  5'- cUCCaGCgCAGCGCGC---GCGGCCugGc -3'
miRNA:   3'- -AGGcCG-GUUGCGCGuugUGUUGGugU- -5'
19071 5' -54.9 NC_004684.1 + 14204 0.66 0.774475
Target:  5'- cCUGGCCAGCgGCGCggU-CGGCCu-- -3'
miRNA:   3'- aGGCCGGUUG-CGCGuuGuGUUGGugu -5'
19071 5' -54.9 NC_004684.1 + 50369 0.66 0.774475
Target:  5'- aCCGGgCGGCGUGguGCuuauucucguCGGCCAUAu -3'
miRNA:   3'- aGGCCgGUUGCGCguUGu---------GUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 60527 0.66 0.774475
Target:  5'- cCCaGaGCCA--GUGCAGCACcACCACGg -3'
miRNA:   3'- aGG-C-CGGUugCGCGUUGUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 40858 0.66 0.773476
Target:  5'- cCCGGCCuGACcgcccagGCGCGACACGucaGCGg -3'
miRNA:   3'- aGGCCGG-UUG-------CGCGUUGUGUuggUGU- -5'
19071 5' -54.9 NC_004684.1 + 19469 0.66 0.771474
Target:  5'- -gUGGCC--CGCGCGACAugcgccccuggagcCAGCCGCu -3'
miRNA:   3'- agGCCGGuuGCGCGUUGU--------------GUUGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.