miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19075 3' -57.4 NC_004684.1 + 8926 0.66 0.640565
Target:  5'- ---aUCGGCGACGA-GGAUgugCGCCu- -3'
miRNA:   3'- uacaGGCCGCUGCUgCCUAa--GCGGua -5'
19075 3' -57.4 NC_004684.1 + 60736 0.68 0.523442
Target:  5'- gGUGcCCGGCGAC--CGGGUggcCGCCGg -3'
miRNA:   3'- -UACaGGCCGCUGcuGCCUAa--GCGGUa -5'
19075 3' -57.4 NC_004684.1 + 15826 0.67 0.544301
Target:  5'- ---cCCGGUGGCGcGCGGcaUCGCCAc -3'
miRNA:   3'- uacaGGCCGCUGC-UGCCuaAGCGGUa -5'
19075 3' -57.4 NC_004684.1 + 22353 0.67 0.554833
Target:  5'- gGUGg-CGGCGGCGGCGGcggUCGCg-- -3'
miRNA:   3'- -UACagGCCGCUGCUGCCua-AGCGgua -5'
19075 3' -57.4 NC_004684.1 + 27319 0.67 0.565423
Target:  5'- -gGUgCGGCcagcuuugacGACGGCGGuaUCGCCGUg -3'
miRNA:   3'- uaCAgGCCG----------CUGCUGCCuaAGCGGUA- -5'
19075 3' -57.4 NC_004684.1 + 18647 0.67 0.597476
Target:  5'- cUGcCCGGUGACGACGuGAccaucgUGCCGc -3'
miRNA:   3'- uACaGGCCGCUGCUGC-CUaa----GCGGUa -5'
19075 3' -57.4 NC_004684.1 + 61487 0.67 0.597476
Target:  5'- gAUGUCgccgcgcaGGCGGCGGCGcucGAUgcgCGCCAg -3'
miRNA:   3'- -UACAGg-------CCGCUGCUGC---CUAa--GCGGUa -5'
19075 3' -57.4 NC_004684.1 + 53722 0.66 0.629781
Target:  5'- gAUGUCCGGC-AUGGugcCGGGUUCgacgGCCAg -3'
miRNA:   3'- -UACAGGCCGcUGCU---GCCUAAG----CGGUa -5'
19075 3' -57.4 NC_004684.1 + 58318 0.66 0.629781
Target:  5'- ---aCCGGCGACGcCGGGUcauggcgCGCCc- -3'
miRNA:   3'- uacaGGCCGCUGCuGCCUAa------GCGGua -5'
19075 3' -57.4 NC_004684.1 + 25301 0.68 0.513127
Target:  5'- ---aCCaGGCGGCGGCGG-UUCGUCGg -3'
miRNA:   3'- uacaGG-CCGCUGCUGCCuAAGCGGUa -5'
19075 3' -57.4 NC_004684.1 + 49177 0.68 0.513127
Target:  5'- -aGUCuCGGCGGCGGCGGcggCGgCGg -3'
miRNA:   3'- uaCAG-GCCGCUGCUGCCuaaGCgGUa -5'
19075 3' -57.4 NC_004684.1 + 6941 0.68 0.482711
Target:  5'- cGUGUCCGGCG-UGAagaaGUUCGCCAc -3'
miRNA:   3'- -UACAGGCCGCuGCUgcc-UAAGCGGUa -5'
19075 3' -57.4 NC_004684.1 + 33833 0.72 0.322179
Target:  5'- uGUGcCCGGCGGCGGCGGcaacgggGCCAa -3'
miRNA:   3'- -UACaGGCCGCUGCUGCCuaag---CGGUa -5'
19075 3' -57.4 NC_004684.1 + 26609 0.71 0.337911
Target:  5'- ---aCCGGCGGCGGCGucaUCGCCAa -3'
miRNA:   3'- uacaGGCCGCUGCUGCcuaAGCGGUa -5'
19075 3' -57.4 NC_004684.1 + 16038 0.71 0.354194
Target:  5'- cGUGcCCGGCGACGACGacaucgUgGCCAa -3'
miRNA:   3'- -UACaGGCCGCUGCUGCcua---AgCGGUa -5'
19075 3' -57.4 NC_004684.1 + 50945 0.71 0.36254
Target:  5'- -cGUCCaGGCGcACGAUGGugugCGCCAg -3'
miRNA:   3'- uaCAGG-CCGC-UGCUGCCuaa-GCGGUa -5'
19075 3' -57.4 NC_004684.1 + 52906 0.7 0.37964
Target:  5'- -cGUCCGGCcagcACGGCGGcgUgGCCGc -3'
miRNA:   3'- uaCAGGCCGc---UGCUGCCuaAgCGGUa -5'
19075 3' -57.4 NC_004684.1 + 36267 0.69 0.431239
Target:  5'- gGUGUCCGGCGGCcuggccaagaacgaGGCGGugcucUCGCUGUc -3'
miRNA:   3'- -UACAGGCCGCUG--------------CUGCCua---AGCGGUA- -5'
19075 3' -57.4 NC_004684.1 + 44765 0.69 0.453191
Target:  5'- cGUGUaCCGGCGAcCGuCGGGgcccCGCCAc -3'
miRNA:   3'- -UACA-GGCCGCU-GCuGCCUaa--GCGGUa -5'
19075 3' -57.4 NC_004684.1 + 56172 0.69 0.462924
Target:  5'- ----aCGGCGACGACGGcggCGCUAUc -3'
miRNA:   3'- uacagGCCGCUGCUGCCuaaGCGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.