miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19075 3' -57.4 NC_004684.1 + 49177 0.68 0.513127
Target:  5'- -aGUCuCGGCGGCGGCGGcggCGgCGg -3'
miRNA:   3'- uaCAG-GCCGCUGCUGCCuaaGCgGUa -5'
19075 3' -57.4 NC_004684.1 + 46634 0.68 0.502897
Target:  5'- --cUCCGGUGugGACGGcacCGCCu- -3'
miRNA:   3'- uacAGGCCGCugCUGCCuaaGCGGua -5'
19075 3' -57.4 NC_004684.1 + 6941 0.68 0.482711
Target:  5'- cGUGUCCGGCG-UGAagaaGUUCGCCAc -3'
miRNA:   3'- -UACAGGCCGCuGCUgcc-UAAGCGGUa -5'
19075 3' -57.4 NC_004684.1 + 10761 0.69 0.472765
Target:  5'- --cUUCGGCGuCGACGGGUugcugucgggguUCGCCGg -3'
miRNA:   3'- uacAGGCCGCuGCUGCCUA------------AGCGGUa -5'
19075 3' -57.4 NC_004684.1 + 43078 0.69 0.472765
Target:  5'- --cUCCGGCGACGggucuuugauACGGAccUCGCCu- -3'
miRNA:   3'- uacAGGCCGCUGC----------UGCCUa-AGCGGua -5'
19075 3' -57.4 NC_004684.1 + 56172 0.69 0.462924
Target:  5'- ----aCGGCGACGACGGcggCGCUAUc -3'
miRNA:   3'- uacagGCCGCUGCUGCCuaaGCGGUA- -5'
19075 3' -57.4 NC_004684.1 + 44765 0.69 0.453191
Target:  5'- cGUGUaCCGGCGAcCGuCGGGgcccCGCCAc -3'
miRNA:   3'- -UACA-GGCCGCU-GCuGCCUaa--GCGGUa -5'
19075 3' -57.4 NC_004684.1 + 36267 0.69 0.431239
Target:  5'- gGUGUCCGGCGGCcuggccaagaacgaGGCGGugcucUCGCUGUc -3'
miRNA:   3'- -UACAGGCCGCUG--------------CUGCCua---AGCGGUA- -5'
19075 3' -57.4 NC_004684.1 + 38485 0.7 0.424682
Target:  5'- -cGUCCGGuCGaucaGCGGCGG--UCGCCAc -3'
miRNA:   3'- uaCAGGCC-GC----UGCUGCCuaAGCGGUa -5'
19075 3' -57.4 NC_004684.1 + 52906 0.7 0.37964
Target:  5'- -cGUCCGGCcagcACGGCGGcgUgGCCGc -3'
miRNA:   3'- uaCAGGCCGc---UGCUGCCuaAgCGGUa -5'
19075 3' -57.4 NC_004684.1 + 50945 0.71 0.36254
Target:  5'- -cGUCCaGGCGcACGAUGGugugCGCCAg -3'
miRNA:   3'- uaCAGG-CCGC-UGCUGCCuaa-GCGGUa -5'
19075 3' -57.4 NC_004684.1 + 16038 0.71 0.354194
Target:  5'- cGUGcCCGGCGACGACGacaucgUgGCCAa -3'
miRNA:   3'- -UACaGGCCGCUGCUGCcua---AgCGGUa -5'
19075 3' -57.4 NC_004684.1 + 26609 0.71 0.337911
Target:  5'- ---aCCGGCGGCGGCGucaUCGCCAa -3'
miRNA:   3'- uacaGGCCGCUGCUGCcuaAGCGGUa -5'
19075 3' -57.4 NC_004684.1 + 33833 0.72 0.322179
Target:  5'- uGUGcCCGGCGGCGGCGGcaacgggGCCAa -3'
miRNA:   3'- -UACaGGCCGCUGCUGCCuaag---CGGUa -5'
19075 3' -57.4 NC_004684.1 + 11832 0.72 0.307001
Target:  5'- cUGUCCGGCGACuGGCGcGAcUUCGgCAa -3'
miRNA:   3'- uACAGGCCGCUG-CUGC-CU-AAGCgGUa -5'
19075 3' -57.4 NC_004684.1 + 24772 0.73 0.258208
Target:  5'- ---aCCGGCGGCGGCGGGggaggUGCCGg -3'
miRNA:   3'- uacaGGCCGCUGCUGCCUaa---GCGGUa -5'
19075 3' -57.4 NC_004684.1 + 17503 1.03 0.001984
Target:  5'- cAUGUCCGGCGACGACGGAUUCGCCAUc -3'
miRNA:   3'- -UACAGGCCGCUGCUGCCUAAGCGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.