Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19075 | 5' | -56.9 | NC_004684.1 | + | 17544 | 1.12 | 0.000616 |
Target: 5'- gCUACGUGCUGAUCCCGCCGUCCUCGCg -3' miRNA: 3'- -GAUGCACGACUAGGGCGGCAGGAGCG- -5' |
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19075 | 5' | -56.9 | NC_004684.1 | + | 6107 | 0.72 | 0.373041 |
Target: 5'- -aACGUcguucauGCUGAUCCacuCGuuGUCCUCGUc -3' miRNA: 3'- gaUGCA-------CGACUAGG---GCggCAGGAGCG- -5' |
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19075 | 5' | -56.9 | NC_004684.1 | + | 56520 | 0.72 | 0.382448 |
Target: 5'- -aACGUGCggaaGGUCUCGCCGguaUCGCu -3' miRNA: 3'- gaUGCACGa---CUAGGGCGGCaggAGCG- -5' |
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19075 | 5' | -56.9 | NC_004684.1 | + | 31720 | 0.7 | 0.455396 |
Target: 5'- -gGCGagaGCuUGAUCUCGCCGUCCUUu- -3' miRNA: 3'- gaUGCa--CG-ACUAGGGCGGCAGGAGcg -5' |
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19075 | 5' | -56.9 | NC_004684.1 | + | 67188 | 0.7 | 0.465038 |
Target: 5'- -gACGUGCgggucacGGUCUCGCCGUUCg-GCa -3' miRNA: 3'- gaUGCACGa------CUAGGGCGGCAGGagCG- -5' |
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19075 | 5' | -56.9 | NC_004684.1 | + | 66525 | 0.7 | 0.474784 |
Target: 5'- -cACGUGCUG-----GCCGUCCUCGUc -3' miRNA: 3'- gaUGCACGACuagggCGGCAGGAGCG- -5' |
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19075 | 5' | -56.9 | NC_004684.1 | + | 55910 | 0.7 | 0.484631 |
Target: 5'- -gAUGUGCccGAacaCCCgGCCGUCCUCGg -3' miRNA: 3'- gaUGCACGa-CUa--GGG-CGGCAGGAGCg -5' |
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19075 | 5' | -56.9 | NC_004684.1 | + | 51753 | 0.69 | 0.524938 |
Target: 5'- -gGCGUGCUccagGcgCuuGUCGUgCUCGCg -3' miRNA: 3'- gaUGCACGA----CuaGggCGGCAgGAGCG- -5' |
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19075 | 5' | -56.9 | NC_004684.1 | + | 66063 | 0.69 | 0.535218 |
Target: 5'- -gGCGUGCgUGAUCCCccaGCCGUggaaC-CGCa -3' miRNA: 3'- gaUGCACG-ACUAGGG---CGGCAg---GaGCG- -5' |
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19075 | 5' | -56.9 | NC_004684.1 | + | 26510 | 0.69 | 0.545568 |
Target: 5'- -cACGUGCUGAcCaCCGCUGacgUgUCGCg -3' miRNA: 3'- gaUGCACGACUaG-GGCGGCa--GgAGCG- -5' |
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19075 | 5' | -56.9 | NC_004684.1 | + | 45154 | 0.69 | 0.545568 |
Target: 5'- cCUGCGcGUUGAUCgCGCgGgugCCgUCGCg -3' miRNA: 3'- -GAUGCaCGACUAGgGCGgCa--GG-AGCG- -5' |
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19075 | 5' | -56.9 | NC_004684.1 | + | 54594 | 0.68 | 0.587535 |
Target: 5'- -cGCGUcgucgGCgggGGUgCCGuuGUCCUCGUu -3' miRNA: 3'- gaUGCA-----CGa--CUAgGGCggCAGGAGCG- -5' |
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19075 | 5' | -56.9 | NC_004684.1 | + | 46069 | 0.68 | 0.598133 |
Target: 5'- aUGCG-GC-GGUCgCGCCGgaccaccgCCUCGCc -3' miRNA: 3'- gAUGCaCGaCUAGgGCGGCa-------GGAGCG- -5' |
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19075 | 5' | -56.9 | NC_004684.1 | + | 66899 | 0.68 | 0.598133 |
Target: 5'- -aGCGUGUcguugucGGUgCUGCCGaCCUCGCu -3' miRNA: 3'- gaUGCACGa------CUAgGGCGGCaGGAGCG- -5' |
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19075 | 5' | -56.9 | NC_004684.1 | + | 54564 | 0.68 | 0.608758 |
Target: 5'- -cACGUcggcaGCaGAg-CCGCCGUCCUCGg -3' miRNA: 3'- gaUGCA-----CGaCUagGGCGGCAGGAGCg -5' |
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19075 | 5' | -56.9 | NC_004684.1 | + | 58897 | 0.68 | 0.608758 |
Target: 5'- -cACG-GCaccGUCUCGCCGUCCcCGCc -3' miRNA: 3'- gaUGCaCGac-UAGGGCGGCAGGaGCG- -5' |
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19075 | 5' | -56.9 | NC_004684.1 | + | 64410 | 0.67 | 0.619402 |
Target: 5'- -aAgGUGCgccgCCCGCCGUCCaggGCa -3' miRNA: 3'- gaUgCACGacuaGGGCGGCAGGag-CG- -5' |
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19075 | 5' | -56.9 | NC_004684.1 | + | 55147 | 0.67 | 0.619402 |
Target: 5'- gUACGUGaccgGAUCgCCGCCGUCgg-GCg -3' miRNA: 3'- gAUGCACga--CUAG-GGCGGCAGgagCG- -5' |
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19075 | 5' | -56.9 | NC_004684.1 | + | 45289 | 0.67 | 0.640713 |
Target: 5'- -gGCGcUGCUGGUUCgCGCUGUCgUUGg -3' miRNA: 3'- gaUGC-ACGACUAGG-GCGGCAGgAGCg -5' |
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19075 | 5' | -56.9 | NC_004684.1 | + | 8724 | 0.67 | 0.661994 |
Target: 5'- -gGCGgcGCUGAUCCCGauGUUCgccgcCGCg -3' miRNA: 3'- gaUGCa-CGACUAGGGCggCAGGa----GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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