miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19075 5' -56.9 NC_004684.1 + 54594 0.68 0.587535
Target:  5'- -cGCGUcgucgGCgggGGUgCCGuuGUCCUCGUu -3'
miRNA:   3'- gaUGCA-----CGa--CUAgGGCggCAGGAGCG- -5'
19075 5' -56.9 NC_004684.1 + 26510 0.69 0.545568
Target:  5'- -cACGUGCUGAcCaCCGCUGacgUgUCGCg -3'
miRNA:   3'- gaUGCACGACUaG-GGCGGCa--GgAGCG- -5'
19075 5' -56.9 NC_004684.1 + 45154 0.69 0.545568
Target:  5'- cCUGCGcGUUGAUCgCGCgGgugCCgUCGCg -3'
miRNA:   3'- -GAUGCaCGACUAGgGCGgCa--GG-AGCG- -5'
19075 5' -56.9 NC_004684.1 + 66063 0.69 0.535218
Target:  5'- -gGCGUGCgUGAUCCCccaGCCGUggaaC-CGCa -3'
miRNA:   3'- gaUGCACG-ACUAGGG---CGGCAg---GaGCG- -5'
19075 5' -56.9 NC_004684.1 + 51753 0.69 0.524938
Target:  5'- -gGCGUGCUccagGcgCuuGUCGUgCUCGCg -3'
miRNA:   3'- gaUGCACGA----CuaGggCGGCAgGAGCG- -5'
19075 5' -56.9 NC_004684.1 + 55910 0.7 0.484631
Target:  5'- -gAUGUGCccGAacaCCCgGCCGUCCUCGg -3'
miRNA:   3'- gaUGCACGa-CUa--GGG-CGGCAGGAGCg -5'
19075 5' -56.9 NC_004684.1 + 66525 0.7 0.474784
Target:  5'- -cACGUGCUG-----GCCGUCCUCGUc -3'
miRNA:   3'- gaUGCACGACuagggCGGCAGGAGCG- -5'
19075 5' -56.9 NC_004684.1 + 67188 0.7 0.465038
Target:  5'- -gACGUGCgggucacGGUCUCGCCGUUCg-GCa -3'
miRNA:   3'- gaUGCACGa------CUAGGGCGGCAGGagCG- -5'
19075 5' -56.9 NC_004684.1 + 31720 0.7 0.455396
Target:  5'- -gGCGagaGCuUGAUCUCGCCGUCCUUu- -3'
miRNA:   3'- gaUGCa--CG-ACUAGGGCGGCAGGAGcg -5'
19075 5' -56.9 NC_004684.1 + 56520 0.72 0.382448
Target:  5'- -aACGUGCggaaGGUCUCGCCGguaUCGCu -3'
miRNA:   3'- gaUGCACGa---CUAGGGCGGCaggAGCG- -5'
19075 5' -56.9 NC_004684.1 + 6107 0.72 0.373041
Target:  5'- -aACGUcguucauGCUGAUCCacuCGuuGUCCUCGUc -3'
miRNA:   3'- gaUGCA-------CGACUAGG---GCggCAGGAGCG- -5'
19075 5' -56.9 NC_004684.1 + 17544 1.12 0.000616
Target:  5'- gCUACGUGCUGAUCCCGCCGUCCUCGCg -3'
miRNA:   3'- -GAUGCACGACUAGGGCGGCAGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.