miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19076 5' -57.9 NC_004684.1 + 50547 0.66 0.569272
Target:  5'- gGCugAGUUGGCCuuucgugGUugGugGAGCg- -3'
miRNA:   3'- aCG--UCGACCGGua-----CGugCugCUCGac -5'
19076 5' -57.9 NC_004684.1 + 15735 0.66 0.569272
Target:  5'- -cCAGCaagGGCCucGUGCACGGCcagcAGCUGc -3'
miRNA:   3'- acGUCGa--CCGG--UACGUGCUGc---UCGAC- -5'
19076 5' -57.9 NC_004684.1 + 33495 0.66 0.569272
Target:  5'- cGCGGCggcGGCCcUGUACucGCGGGCg- -3'
miRNA:   3'- aCGUCGa--CCGGuACGUGc-UGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 41995 0.66 0.568202
Target:  5'- gGUA-CUGGCCgccgcuGUGCGCGGCGGcguaggcGCUGa -3'
miRNA:   3'- aCGUcGACCGG------UACGUGCUGCU-------CGAC- -5'
19076 5' -57.9 NC_004684.1 + 32420 0.66 0.564995
Target:  5'- aGCAGCggcaccucgggcgUGGCgAUGCAccucgacucgaacuCGGCGGGCa- -3'
miRNA:   3'- aCGUCG-------------ACCGgUACGU--------------GCUGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 1493 0.66 0.558594
Target:  5'- gGCGGCccuggUGGCCAaccUGCGCGcCGcGCUc -3'
miRNA:   3'- aCGUCG-----ACCGGU---ACGUGCuGCuCGAc -5'
19076 5' -57.9 NC_004684.1 + 25027 0.66 0.558594
Target:  5'- gUGCAGCUGGaggcgGCAuCGACGuGGCg- -3'
miRNA:   3'- -ACGUCGACCggua-CGU-GCUGC-UCGac -5'
19076 5' -57.9 NC_004684.1 + 46288 0.66 0.558594
Target:  5'- cGCGGC-GGCCGaGCGCGuuGCGGcGCUu -3'
miRNA:   3'- aCGUCGaCCGGUaCGUGC--UGCU-CGAc -5'
19076 5' -57.9 NC_004684.1 + 54468 0.67 0.552215
Target:  5'- gGCGGCgaaguUGGCCGacgGCgcaccggcaccgcugGCGGCGAGCg- -3'
miRNA:   3'- aCGUCG-----ACCGGUa--CG---------------UGCUGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 20629 0.67 0.547973
Target:  5'- gGCgAGC--GCCA-GCGCGuCGAGCUGa -3'
miRNA:   3'- aCG-UCGacCGGUaCGUGCuGCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 28978 0.67 0.547973
Target:  5'- gUGgAGCUGaGCC-UGCGCGACcGGgaGg -3'
miRNA:   3'- -ACgUCGAC-CGGuACGUGCUGcUCgaC- -5'
19076 5' -57.9 NC_004684.1 + 40898 0.67 0.547973
Target:  5'- aGCAcguGCUcGCCAggcaugGCAUGGCGGGCa- -3'
miRNA:   3'- aCGU---CGAcCGGUa-----CGUGCUGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 30478 0.67 0.547973
Target:  5'- gGCAcGCUcGGCUAUGacccgaGCGugGGGCg- -3'
miRNA:   3'- aCGU-CGA-CCGGUACg-----UGCugCUCGac -5'
19076 5' -57.9 NC_004684.1 + 65995 0.67 0.547973
Target:  5'- gGUcGCUGGCCAgUGCaACGGCG-GCc- -3'
miRNA:   3'- aCGuCGACCGGU-ACG-UGCUGCuCGac -5'
19076 5' -57.9 NC_004684.1 + 57276 0.67 0.537417
Target:  5'- -aCAGCUcGGCC-UGUgACGGCGAGCc- -3'
miRNA:   3'- acGUCGA-CCGGuACG-UGCUGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 5239 0.67 0.537417
Target:  5'- aGCccuGCgcaaGGCCggGCACGGCGAgGCg- -3'
miRNA:   3'- aCGu--CGa---CCGGuaCGUGCUGCU-CGac -5'
19076 5' -57.9 NC_004684.1 + 26776 0.67 0.537417
Target:  5'- cGCGGCggugaucaacGUgGUGCugGACGuGCUGa -3'
miRNA:   3'- aCGUCGac--------CGgUACGugCUGCuCGAC- -5'
19076 5' -57.9 NC_004684.1 + 38810 0.67 0.537417
Target:  5'- aGCGGCggugcccgccUGGCgGUGCcCGACGGcCUGg -3'
miRNA:   3'- aCGUCG----------ACCGgUACGuGCUGCUcGAC- -5'
19076 5' -57.9 NC_004684.1 + 46942 0.67 0.526932
Target:  5'- cGCAGCaucuucgccGCCGUGCACaGCGccaGGCUGa -3'
miRNA:   3'- aCGUCGac-------CGGUACGUGcUGC---UCGAC- -5'
19076 5' -57.9 NC_004684.1 + 57160 0.67 0.526932
Target:  5'- gGCGGCggUGGCCGacgcGCACGcuCGGGCg- -3'
miRNA:   3'- aCGUCG--ACCGGUa---CGUGCu-GCUCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.